Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24522 203 4e-47 seq74122 127 3e-24 >seq24522 Length=437104 Score = 203 bits (224), Expect = 4e-47 Identities = 326/462 (71%), Gaps = 15/462 (3%) Strand=Plus/Plus Query 62911 AAACGGCT-ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62969 ||||| || ||||||| | ||| |||| | || || || || | |||||| || Sbjct 250008 AAACGACTTACCTCATCTGGTGCCGTGTATTCAACAATTTCTGTACATAAATTACTGCAT 250067 Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63029 || || || || | |||||||| || ||||| |||||| | |||||| || || ||| Sbjct 250068 TTTATTGTCCCAAGGTTTTGTTGGTTGCTCTTGCGGTTACAAGAATCCTTGTACAGCATG 250127 Query 63030 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63089 | || ||||||||||| | |||| |||||||| || | |||||| |||| || Sbjct 250128 TAAGGTGTACCAGTTTCGGTTTGAGCTTCTATAACTGCATACCAGACTTTCTGAGCTTTC 250187 Query 63090 ATTATAGATTTGTATCTCCTTT-----CTCTTTCGTATAGTG-TATACAATCGTTCGAAC 63143 | || || | | ||||| || |||| || | || ||||||| ||| || Sbjct 250188 A-----GAGTTCTTTTACCTTTACCAGCTTTTTCATA-ACTGATATACAAGTCTTCAAAT 250241 Query 63144 TCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCT 63203 || | ||||||||||| | || || ||||||| ||||||||||| | ||| || Sbjct 250242 TCTTTTCCCCAAACATCCGAAAGGCCTGGGCATTCATTGGGACACATCAATGTCCAATCA 250301 Query 63204 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATC 63262 || | || | ||||||||||| || |||||||||||||| || || ||| || | || Sbjct 250302 CCATTTTCTTCAACTCGTTTCATGAAAAGATCAGGAATCCAGAGGGC-ATAGAACAAGTC 250360 Query 63263 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63322 || || || ||||| || ||||||||||||||||| ||| ||||| | | ||||| Sbjct 250361 TCGGGCTCGCTGTTCATCCTTTCCTGTATTCTTTTTGCAATCAAGGAAGTCAAAGATATC 250420 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 | |||||| ||||| ||||| || || | | ||||||| || Sbjct 250421 GGCATGCCAGGGTTCTAAGTAAATAGCAAAAGCTCCAGGGCG 250462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || || ||||| |||||||| ||| |||||| | | | | Sbjct 246909 TAAGTCTCGTAAGGACCAAATTTTTCAGCAAGTTCACAGCTCATCTCTAAGGAAGCAAAG 246968 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 || || || | ||||||| ||||| | ||||||||||| ||| ||||| || || Sbjct 246969 TAGATAGTAGCAAAGATCTGTTTATTCAATTCTTGTGCTTCTTCGCTGTCAAACGGGTAT 247028 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | |||| || || || || || |||||||||||||| || || |||| ||||| Sbjct 247029 CGCATTAGAAGGAAAGCATCGGCCAAACCTTGAACACCAATGCCAATTGGTCGATGTC 247086 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402 ||||||||||||| || | | || |||||||| |||||||| | ||| | |||||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||||||| | ||| || || || || ||||| ||||| || |||| Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCA 241978 >seq74122 Length=500396 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || |||| ||| ||| || || | || ||||| | |||||||| | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || || | ||| || || ||||| || |||||||||||||| ||||||| | Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33505 ||| || | |||| ||| | | ||||| ||||| || ||||||||| || | Sbjct 192105 CAACAACACGCTCTGAATATGGGACCTTGTCAGAAATCCATTTCAAAGCCCAATCAGCTT 192046 Query 33506 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||| | || ||||| || ||||||||||| || | ||| Sbjct 192045 TCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATA 192003 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 |||||| || ||||||||||| |||||||| || | || || || |||||||| ||||| Sbjct 193926 AGACATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCC 193867 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||||||||| || | |||||| |||||||| ||||| Sbjct 193866 TTCCAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621766138829840