Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq24522 203 4e-47 seq74122 127 3e-24 >seq24522 Length=437104 Score = 203 bits (224), Expect = 4e-47 Identities = 326/462 (71%), Gaps = 15/462 (3%) Strand=Plus/Plus Query 62766 AAACGGCT-ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 ||||| || ||||||| | ||| |||| | || || || || | |||||| || Sbjct 250008 AAACGACTTACCTCATCTGGTGCCGTGTATTCAACAATTTCTGTACATAAATTACTGCAT 250067 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 || || || || | |||||||| || ||||| |||||| | |||||| || || ||| Sbjct 250068 TTTATTGTCCCAAGGTTTTGTTGGTTGCTCTTGCGGTTACAAGAATCCTTGTACAGCATG 250127 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 62944 | || ||||||||||| | |||| |||||||| || | |||||| |||| || Sbjct 250128 TAAGGTGTACCAGTTTCGGTTTGAGCTTCTATAACTGCATACCAGACTTTCTGAGCTTTC 250187 Query 62945 ATTATAGATTTGTATCTCTTTT-----CTCTTTCGTATAGTG-TATACAATCGTTCGAAC 62998 | || || | | | ||| || |||| || | || ||||||| ||| || Sbjct 250188 A-----GAGTTCTTTTACCTTTACCAGCTTTTTCATA-ACTGATATACAAGTCTTCAAAT 250241 Query 62999 TCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCT 63058 || | ||||||||||| || || || ||||||| ||||||||||| | ||| || Sbjct 250242 TCTTTTCCCCAAACATCCGAAAGGCCTGGGCATTCATTGGGACACATCAATGTCCAATCA 250301 Query 63059 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATC 63117 || | || | ||||||||||| || |||||||||||||| || || ||| || | || Sbjct 250302 CCATTTTCTTCAACTCGTTTCATGAAAAGATCAGGAATCCAGAGGGC-ATAGAACAAGTC 250360 Query 63118 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63177 || || || ||||| || ||||||||||||||||| ||| ||||| | | ||||| Sbjct 250361 TCGGGCTCGCTGTTCATCCTTTCCTGTATTCTTTTTGCAATCAAGGAAGTCAAAGATATC 250420 Query 63178 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 | |||||| ||||| ||||| || || | | ||||||| || Sbjct 250421 GGCATGCCAGGGTTCTAAGTAAATAGCAAAAGCTCCAGGGCG 250462 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 62198 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 62257 ||||||||||||| || | | || |||||||| |||||||| | ||| | |||||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 62258 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||||||| | ||| || || || || ||||| ||||| || |||| Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCA 241978 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491 || || ||||| || || || ||||| |||||||| ||| |||||| | | | | Sbjct 246909 TAAGTCTCGTAAGGACCAAATTTTTCAGCAAGTTCACAGCTCATCTCTAAGGAAGCAAAG 246968 Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 || || || | ||||||| ||||| | ||||| ||||| ||| ||||| || || Sbjct 246969 TAGATAGTAGCAAAGATCTGTTTATTCAATTCTTGTGCTTCTTCGCTGTCAAACGGGTAT 247028 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | |||| || || || || || |||||||||||||| || || |||| ||||| Sbjct 247029 CGCATTAGAAGGAAAGCATCGGCCAAACCTTGAACACCAATGCCAATTGGTCGATGTC 247086 >seq74122 Length=500396 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || |||||||| ||| || || | || ||||| | |||||||| | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| || || | ||||| || ||||| || || ||||||||||| | ||||| | Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 32803 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 32862 ||| || | |||| ||| | | ||||| ||||| || ||||||||| || | Sbjct 192105 CAACAACACGCTCTGAATATGGGACCTTGTCAGAAATCCATTTCAAAGCCCAATCAGCTT 192046 Query 32863 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||| | || |||||||||||||| ||||| || | ||| Sbjct 192045 TCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATA 192003 Score = 123 bits (136), Expect = 3e-23 Identities = 159/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 33045 aaaTTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 || |||||||| || ||||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 189525 AAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGACATGAGAAATGAAA 189466 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | | ||| || | | | | ||| | ||| | | ||| || |||| ||| || ||| Sbjct 189465 TGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTGATAAATCAACCTCT 189406 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 ||||| ||||| || || || | || || |||||||| |||| ||||| ||||||||| Sbjct 189405 TCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATATGTCTTGATATTGA 189346 Query 33225 ATTGGAAAAATAACAAATCTATTTG-GATTTTTTGCAA 33261 || ||||| || ||||| | |||| | ||| ||| || Sbjct 189345 ATAGGAAACATTACAAAACGGTTTGAGCTTTCTTGTAA 189308 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 |||||| || ||||||||||| |||||||| || | || || || |||||||| || || Sbjct 193926 AGACATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCC 193867 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATT 32449 ||| ||||| || | |||||| ||||| |||||||| Sbjct 193866 TTCCAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| ||||||||||| | ||||| |||||||| |||||||| |||||||| || Sbjct 191302 ATCTTTAATGTATGTATCAATAAGGAGACTGTACATTTCAGAATGAATATTTTCAATAGC 191243 Query 32981 CATTTGAAATCCGTAGAA 32998 ||||| ||| |||| || Sbjct 191242 AATTTGGAATGCGTAAAA 191225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632430681250400