Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq74122 143 3e-29 seq21908 86.0 7e-12 >seq74122 Length=500396 Score = 143 bits (158), Expect = 3e-29 Identities = 177/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 ||| ||| ||| | |||||||| || || ||||| ||| |||||||||||||| | | Sbjct 189536 AATATCT-TACCAAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGACA 189478 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 || || ||||| | |||||| ||| | || ||||| | | | ||| ||||| Sbjct 189477 TGAGAAATGAAATGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTGAT 189418 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | ||| || ||||| |||||||| || || || | ||||| || ||||| ||||||| Sbjct 189417 AAATCAACCTCTTCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATATG 189358 Query 93647 TCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 |||||||||||||| ||||| || |||||||| || | | | |||| || | |||||| Sbjct 189357 TCTTGATATTGAATAGGAAACATTACAAAACGGTTTGAGCTTTCTTGTAACAGGGGCTCT 189298 Query 93707 A 93707 | Sbjct 189297 A 189297 Score = 109 bits (120), Expect = 6e-19 Identities = 157/217 (72%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 || || |||||||||||||| ||||| || | | || || ||||| | ||| || || Sbjct 192211 ATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCTTTAACCAGAAAATA 192152 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247 | ||||||| |||||| ||||| || ||||| || | ||||| || |||| ||| || Sbjct 192151 GCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAGCAACAACACGCTCT 192092 Query 93248 GCAAAATTTGCGGAATTACTGCTG--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAA 93305 | ||| || ||| | | | | |||||||| ||||||||||| ||||| || |||| Sbjct 192091 G---AATATG-GGACCTTGT-CAGAAATCCATTTCAAAGCCCAATCAGCTTTCTTTTTAA 192037 Query 93306 TACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 | || || | ||| || || || || || | ||||| Sbjct 192036 TGCATGGCATTGTCTCTATGGCATTGAACAAATAATC 192000 >seq21908 Length=1199226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 162752 CCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGATGCTCTAACCACTGA 162811 ||||| |||||||||||||||||||| || || || |||||| ||||||||||||||| Sbjct 1186944 CCTCTAGTGAGAATCGAACTCACGACCACTGGTTTACAAGACCAGTGCTCTAACCACTGA 1186885 Query 162812 GCTAAAGAGGCTACA 162826 |||| ||||| ||| Sbjct 1186884 GCTACGGAGGCAACA 1186870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555805033687760