Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq74122 154 2e-32 seq24522 138 1e-27 >seq74122 Length=500396 Score = 154 bits (170), Expect = 2e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| ||||||||||| ||||||||||| || |||||||| || || ||||| ||| Sbjct 189528 ACCAAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGCCAAGACATGAGAAATG 189469 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 ||||| | |||||| | | ||| | | ||| | | ||| || |||||||| || Sbjct 189468 AAATGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATCCTTTGATAAATCAACC 189409 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 ||||| || ||||| |||||||| | ||||| ||||||||| ||||||| || ||||| Sbjct 189408 TCTTCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCTCCATATGTCTTGATAT 189349 Query 19525 TGTATAGGAAATATAACAAA 19544 || |||||||| || ||||| Sbjct 189348 TGAATAGGAAACATTACAAA 189329 Score = 154 bits (170), Expect = 2e-32 Identities = 171/226 (76%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || |||||||| ||||| ||||||||||| | || | || | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||||| |||| |||||| || ||||| || || || |||||||| | ||||||| Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | | ||| ||| | | | | || | | ||||||||||| |||||||||| Sbjct 192105 CAACAACACGCTCTGAATA--TGGGA-CCTTGTCAGAAATCCATTTCAAAGCCCAATCAG 192049 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 | |||||||| | ||||||||||||||||| | ||| || | ||| Sbjct 192048 CTTTCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATA 192003 Score = 109 bits (120), Expect = 6e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| || ||||||||||||||||| ||||||| || |||||||||||||| ||||| || Sbjct 193923 CATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCCTTC 193864 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 ||||| || ||||||||||||||||||||| Sbjct 193863 CAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| |||| ||| || | | |||||||||||| |||||||||||||| ||||| Sbjct 191302 ATCTTTAATGTATGTATCAATAAGGAGACTGTACATTTCAGAATGAATATTTTCAATAGC 191243 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTC 19313 || || ||| ||||||| | | |||||| Sbjct 191242 AATTTGGAATGCGTAAAATGAACGTGCTTC 191213 >seq24522 Length=437104 Score = 138 bits (152), Expect = 1e-27 Identities = 291/433 (67%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| ||| || |||| | ||||| | ||||| ||||| ||||| || || Sbjct 250016 TACCTCATCTGGTGCCGTGTATTCAACAATTTCTGTACATAAATTACTGCATTTTATTGT 250075 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 || | ||||| || || | |||||| | |||||||| ||||| ||||||| Sbjct 250076 CCCAAGGTTTTGTTGGTTGCTCTTGCGGTTACAAGAATCCTTGTACAGCATGTAAGGTGT 250135 Query 48026 TCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGC 48085 |||||||| | |||| ||| || | | | ||| || || ||| || | | Sbjct 250136 ACCAGTTTCGGTTTGAGCTTCTATAACTGCATACCAGACTTTCTGAGCTTTCAGAGTTCT 250195 Query 48086 TCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACAC 48145 | || ||||| | | | ||| || | |||| || | |||||||| | || | || Sbjct 250196 TTTACCTTTACCAGCTTTTTCATAACTGATATACAAGTCTTCAAATTCTTTTCCCCAAAC 250255 Query 48146 ATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTAC 48205 || | || || |||||||| ||||||||||||| |||||| ||| | || || Sbjct 250256 ATCCGAAAGGCCTGGGCATTCATTGGGACACATCAATGTCCAATCACCATTTTCTTCAAC 250315 Query 48206 TCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTT 48264 || |||| || | ||| || ||||| || || ||| || || || | | || ||| Sbjct 250316 TCGTTTCATGAAAAGATCAGGAATCCAGAGGGC-ATAGAACAAGTCTCGGGCTCGCTGTT 250374 Query 48265 CTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTT 48324 | || || || ||||| |||| ||||| ||||| | ||||| |||||||| |||| Sbjct 250375 CATCCTTTCCTGTATTCTTTTTGCAATCAAGGAAGTCAAAGATATCGGCATGCCAGGGTT 250434 Query 48325 CTAAATATATTGC 48337 |||| || || || Sbjct 250435 CTAAGTAAATAGC 250447 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 ||||||||||| || || | | |||| ||||| || ||||| | ||| || || ||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 |||||||||| ||| || || || || || || ||||| | || | ||| | ||| || Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCAGTAACAGGCTGTTC 241992 Query 47451 CTTACTCCAT 47460 |||||||||| Sbjct 241993 CTTACTCCAT 242002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561043083873360