Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20954 102 1e-15 seq20788 96.9 4e-14 seq5704 87.8 2e-11 >seq20954 Length=27819 Score = 102 bits (112), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| ||||| || ||||| | ||| || | | ||| || |||||||| |||| || Sbjct 12968 CAGACGCACAGCAGTCTGCACCTCACGGCTACTGATGGTTGAACGCTTGTTGTAGTGAGC 13027 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || ||||| ||| || | | || | |||| || ||||||||||| |||||||| Sbjct 13028 CAAACGGCTGGCTTCAGAAGCTATTCTTTCGAACAAATCGTTGACAAAACTGTTCATGAT 13087 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||||| | ||| |||||||||| ||||||||| || ||||| | || |||||||| Sbjct 13088 AGACATAGCTTTGCTGGAGATGCCAGTGTCGGGGTGGACTTGCTTCATTACTTTGTAGAT 13147 Query 1254548 G 1254548 | Sbjct 13148 G 13148 >seq20788 Length=128613 Score = 96.9 bits (106), Expect = 4e-14 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 ||| ||||| || ||||| | ||| || | | ||| || |||||||| |||| || Sbjct 5361 CAGACGCACAGCAGTCTGTACCTCACGGCTACTGATGGTTGAACGCTTGTTGTAGTGAGC 5302 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || ||||| ||| || | | || | |||| || ||||||||||| |||||||| Sbjct 5301 CAAACGGCTGGCTTCAGAAGCTATTCTTTCGAACAAATCGTTGACAAAACTGTTCATGAT 5242 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 ||||| | ||| |||||||||| ||||||||| || || || | || |||||||| Sbjct 5241 AGACATAGCTTTGCTGGAGATGCCAGTGTCGGGGTGGACTTGTTTCATTACTTTGTAGAT 5182 Query 1254548 G 1254548 | Sbjct 5181 G 5181 >seq5704 Length=563339 Score = 87.8 bits (96), Expect = 2e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||||| | | | ||| || || || ||||||| ||| || | | ||| | Sbjct 92744 TGGCCAACTCGCCAGGGAGAAGCAGACGGACAGCAGTCTGGACCTCACGGCTACTGATGG 92803 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | || ||||| |||| |||| ||||| ||| || | | || | |||| || | Sbjct 92804 TTGAACGTTTGTTGTAGTGAGCCAAACGGCTGGCTTCAGAAGCTATTCTTTCGAACAAAT 92863 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||||||| |||||||| ||||| | ||| |||| || || ||||||||| | Sbjct 92864 CGTTGACAAAACTGTTCATGATAGACATAGCTTTGCTGGAAATACCAGTGTCGGGGTGGA 92923 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | || || | || ||||||||| Sbjct 92924 CTTGTTTCATTACTTTGTAGATG 92946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6094692121270658