Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq15337 138 9e-28 seq2214 95.1 9e-15 >seq15337 Length=1015838 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| || || || | ||| || || |||||||| || || || ||||||| Sbjct 840441 CCACCTCTCAGTCGGAGTACAAGATGGAGAGTAGATTCTTTCTGGATATTGTAATCCGAG 840382 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || ||||| || ||| | |||| | || ||||| || ||| Sbjct 840381 AGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGGGGA 840322 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| |||||| | ||| ||| |||| | |||||| ||| ||||||| Sbjct 840321 ATACCTTCTTTGTCTTG-AATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCTAC 840263 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 840262 TTCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 840215 Score = 125 bits (138), Expect = 5e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || || |||||||| || || || ||||| | | || ||| | Sbjct 840657 CGGAGTACAAGATGGAGAGTTGATTCTTTCTGGATATTGTAATCTGAGAGAGTACGACCA 840598 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||| || ||| | |||| | || ||||| || |||||||| |||||| Sbjct 840597 TCTTCCAACTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGAATACCTTCTTTG 840538 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||| ||| |||| | |||||| ||| |||||||||| | || || Sbjct 840537 TCTTG-AATTTTGGCTTTTACATTTTCAATAGTGTCGGAAGGTTCTACTTCCAATGTGAT 840479 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | ||||| ||||| || ||||| Sbjct 840478 GGTTTTTCCTGTAAGTGTTTTTACAAAAATTTGCAT 840443 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| || || || | ||| || || |||||||| || || || ||||| | Sbjct 840897 CCACCTCTCAGTCGAAGTACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCTGAG 840838 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || ||||| || ||| | |||| | ||| ||||| || ||| Sbjct 840837 AGAGTACGACCATCTTCCAGCTGTTTTCCTGCAAAAATCAGACGTTGTTGATCTGGGGGA 840778 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| |||||| | ||| ||| |||| | || || ||| | ||||| Sbjct 840777 ATACCTTCTTTGTCTTG-AATTTTGGCTTTTACATTTTCAATGGTATCTGAAGGCTCTAC 840719 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 840718 TTCCAATGTGATGGTTTTTCCTGTGAGTGTTTTTACAAAAATTTGCAT 840671 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | |||||| || |||||||| || || || ||||| | Sbjct 841125 CCACCTCTCAATCGAAGTACAAGATGAAGGGTAGATTCTTTCTGGATATTGTAATCTGAG 841066 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || ||||| || ||| | |||| | || ||||| || ||| Sbjct 841065 AGAGTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGA 841006 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| || ||| |||| | || || ||| |||||||| Sbjct 841005 ATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCTACT 840946 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 840945 TCCAATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 840899 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || || | ||| || || |||||||| || || || ||||| | Sbjct 839071 CCACCTCTCAACCGGAGTACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCTGAG 839012 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || | ||||| || ||| | ||||| | || ||||| || ||| Sbjct 839011 AGGGTACGACCATCTTCCAACTGTTTCCCTGCAAAAATCAAACGCTGTTGATCTGGAGGA 838952 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | ||| || ||| |||| | || ||||| |||| || Sbjct 838951 ATACCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATTGTATCAGACGGTTCCACC 838892 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || || || || || | ||||| ||||| || |||||||| Sbjct 838891 TCCAAAGTAATGGTCTTTCCCGTCAGTGTTTTTACAAAAATTTGCATTTT 838842 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 || ||| ||| || || ||||| || ||| | |||| | || ||||| || |||||| Sbjct 839236 GTACGACCATCTTCCAGCTGTTTCCCTGCAAAAATCAGACGCTGTTGATCTGGAGGAATA 839177 Query 29683 CCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCA 29742 || ||||||||||| | ||| || ||| |||| | || || ||| |||||||||| Sbjct 839176 CCTTCTTTGTCTTGGATCTTTGCCTTTACATTTTCAATGGTATCTGAAGGTTCTACTTCC 839117 Query 29743 AGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || || | ||||| ||||| || ||||| Sbjct 839116 AATGTGATGGTTTTTCCTGTAAGTGTTTTCACAAAAATTTGCAT 839073 >seq2214 Length=644335 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||||||||| || || || ||||||||||| || || | Sbjct 547416 CCACCTCGCAAACGAAGGACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCTGAC 547357 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| || |||||| | ||||||||||||||||| || ||| Sbjct 547356 AGCGTACGGCCATCCTCAAGTTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGAGGA 547297 Query 29680 ATACC 29684 || || Sbjct 547296 ATTCC 547292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384507111956034