Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24522 194 2e-44 seq74122 145 1e-29 >seq24522 Length=437104 Score = 194 bits (214), Expect = 2e-44 Identities = 284/397 (72%), Gaps = 6/397 (2%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || |||||||||| |||||| ||||| || ||||| || ||||| || || ||||| | Sbjct 250044 ATTTCTGTACATAAATTACTGCATTTTATTGTCCCAAGGTTTTGTTGGTTGCTCTTGCGG 250103 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| | |||||||| || || | || ||||||||||| | |||| ||| |||| Sbjct 250104 TTACAAGAATCCTTGTACAGCATGTAAGGTGTACCAGTTTCGGTTTGAGCTTCTATAACT 250163 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCT--CTTTTTCATATT 69502 | | ||| || | ||| || | | |||| || | | | |||||||||| Sbjct 250164 GCATACCAGACTTTCTGAGCTTTCAGA--GTTCTTTTACCTTTACCAGCTTTTTCATAAC 250221 Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 |||| | ||| ||||| | |||||||||||| | || || |||||||| | Sbjct 250222 TGATATACAAGTCTTCAAATTCTTTTCCCCAAACATCCGAAAGGCCTGGGCATTCATTGG 250281 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 |||||||||||| ||| || ||| || | |||||||||||| || ||||| ||||||| Sbjct 250282 GACACATCAATGTCCAATCACCATTTTCTTCAACTCGTTTCATGAAAAGATCAGGAATCC 250341 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 | || || ||| || | |||| || || | ||| || ||||||||||| ||||| | Sbjct 250342 AGAGGGC-ATAGAACAAGTCTCGGGCTCGCTGTTCATCCTTTCCTGTATTCTTTTTGCAA 250400 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTA 69718 || || || || | ||||| | |||||| ||||||| Sbjct 250401 TCAAGGAAGTCAAAGATATCGGCATGCCAGGGTTCTA 250437 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 ||||| ||||| | ||| | | || |||||||| |||||||| | ||| | || ||| Sbjct 241873 AATTCTCCAGACAGCACACGTCTTGTATAAATATTGCTGGTATAGGCTTCAATGGACTCA 241932 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 |||||||| ||||| || || || || ||||||||||| || |||| || | || || Sbjct 241933 TTATTTCCAAGAATCTGGGCTGTGGAAGCAGTTGGCATCGGAGCCAGTAACAGGCTGTTC 241992 Query 68842 CTAAGACCATGT 68853 || | |||||| Sbjct 241993 CTTACTCCATGT 242004 >seq74122 Length=500396 Score = 145 bits (160), Expect = 1e-29 Identities = 171/229 (75%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || |||||||| || ||||| | |||||||| | ||||||||| | Sbjct 192225 CCTCATCTCTGCTGATTAATTCATTGCTGAATGTCAAACCAGGCATGATACCACGCTTCT 192166 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || ||||||||||| ||||| || ||||| |||||||| | ||||| | Sbjct 192165 TTAACCAGAAAATAGCAGCAAAAGAACCAGAGAAAAAGATTCCTTCTACCCCAGCAAAAG 192106 Query 39759 CAACAAGTCTCTCTCCGTA----ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCA 39814 |||||| | |||| || || | | ||| | ||||| ||| ||||||||| Sbjct 192105 CAACAACACGCTCTGAATATGGGACCT-TGTCAGAA---ATCCATTTCAAAGCCCAATCA 192050 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || | || |||||||| ||||| ||||| || | ||||| Sbjct 192049 GCTTTCTTTTTAATGCATGGCATTGTCTCTATGGCATTGAACAAATAAT 192001 Score = 143 bits (158), Expect = 4e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 |||| || ||||| || || |||||||| || ||||||||||| || |||||||| || Sbjct 189541 TGAAGAATATCTTACC---AAGTTTTCATTAACAATTCCATCACTTGCAGCAAAAAAAGC 189485 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 ||| ||||| ||| |||| | |||||| | | ||||||| | ||||| | ||| Sbjct 189484 CAAGACATGAGAAATGAAATGCTGTTCATCAGTTTTCAATTTTTCCCAGTGGCCCAAATC 189425 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 ||||||| ||| || ||||| | ||||| || || || | || || || |||||| | Sbjct 189424 CTTTGATAAATCAACCTCTTCCACAGTCCAGAAAGAAGCAACAGCTTTCTTATACATGCT 189365 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTG-GATTTTTTGCAA 40217 |||||| || ||||||| || ||||| || ||||| | |||| | ||| ||| || Sbjct 189364 CCATATGTCTTGATATTGAATAGGAAACATTACAAAACGGTTTGAGCTTTCTTGTAA 189308 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| || ||||||||||| ||||||||||| | ||||| || |||||||| || ||| Sbjct 193925 GACATGACGCCCATTTTTTGATATTCACCAACTCTCTTCTCAAAGAAATTAGTCTTTCCT 193866 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||||| || | |||||| |||||||| ||||| Sbjct 193865 TCCAATGAGATGTGTTCCATAAAATCAAATGGATT 193831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685606472433360