Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Octopus_20bimaculoides_20[refseq_20GCF_5F001194135.1_202015-08-18] 151,674 sequences; 2,338,188,782 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq74122 114 1e-20 seq144806 87.8 1e-12 >seq74122 Length=500396 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| ||||||| ||||||||||| ||||||||| ||||| || ||||| || Sbjct 189329 TTTGTAATGTTTCCTATTCAATATCAAGACATATGGAGCATGTATAAGAAAGCTGTTGCT 189388 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || ||||| | ||||| |||||||| | || || || | || ||| ||| Sbjct 189389 TCTTTCTGGACTGTGGAAGAGGTTGATTTATCAAAGGATTTGGGCCACTGGGAAAAATTG 189448 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| | | ||| | ||||| || ||| || ||||| ||||||||||| || || || Sbjct 189449 AAAACTGATGAACAGCATTTCATTTCTCATGTCTTGGCTTTTTTTGCTGCAAGTGATGGA 189508 Query 43880 ATAGTCAATGAAAATTTGGTTAG 43902 || || |||||||| ||||| || Sbjct 189509 ATTGTTAATGAAAACTTGGTAAG 189531 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 ||||| ||||| ||||| ||| | || ||| |||||| | ||||| || ||||| | || Sbjct 192006 TTGTTCAATGCCATAGAGACAATGCCATGC-ATTAAAAAGAAAGCTGATTGGGCTTTGAA 192064 Query 44098 ATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 |||||| | || | | | | ||| || |||| || ||||| | || ||||| Sbjct 192065 ATGGATTTCTGACAAGGTCCCATATTCAGAGCGTGTTGTTGCTTTTGCTGGGGTAGAAGG 192124 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || || || || || || ||||| || || || ||||||||||| || ||| | ||||| Sbjct 192125 AATCTTTTTCTCTGGTTCTTTTGCTGCTATTTTCTGGTTAAAGAAGCGTGGTATCATGCC 192184 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||| ||||| || ||||| ||||| || | ||||| Sbjct 192185 TGGTTTGACATTCAGCAATGAATTAATCAGCAGAGATGA 192223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 |||||||| | ||||| | || |||||||| || |||||||||||||| ||||||||| Sbjct 191213 GAAGCACGTTCATTTTACGCATTCCAAATTGCTATTGAAAATATTCATTCTGAAATGTAC 191272 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || || ||||| ||||| |||||| Sbjct 191273 AGTCTCCTTATTGATACATACATTAAAGAT 191302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||||||||||||| | || || |||||||| || || || || ||||| || Sbjct 193831 AATCCATTTGATTTTATGGAACACATCTCATTGGAAGGAAAGACTAATTTCTTTGAGAAG 193890 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | ||||| |||||||| ||||||||||||| Sbjct 193891 AGAGTTGGTGAATATCAAAAAATGGGCGTCATG 193923 >seq144806 Length=4835 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/171 (72%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | ||||||||||||||||| |||| ||| |||||||| || |||| | | Sbjct 3013 AGGTGATTTAGGTCCTGTTTATGGATTCCAGTGGCGTCATTTTGGTGCCGAATACCAAAA 2954 Query 40925 TATGTACTCTGATTA--TACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACG 40982 |||| ||| |||||| || || |||||| | || ||||| | |||||| || | Sbjct 2953 TATGCACTGTGATTATGTATCA--AAAGGAGTCGACCAATTGAAACAAGTTATAAATCAG 2896 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCA 41033 ||||| | |||| || || || ||||| ||| || ||||| ||| Sbjct 2895 ATTAAGAGCAATCCAAATGATCGTCGAATAATCATGTCTGCTTGGAATCCA 2845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396721291902370