Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq563 123 3e-23 >seq563 Length=403863 Score = 123 bits (136), Expect = 3e-23 Identities = 190/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || |||||| ||| ||| ||| || || || ||||||||||| || | ||| | Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT----TCAGAAAGTAG 54480 || || | ||| || | || ||||||||||| ||||| | ||| ||| |||| Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGT-- 148720 Query 54481 ATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 54539 |||| ||||| | ||| | ||| || ||| || | || || || || | ||||||| Sbjct 148719 --TGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCA 148663 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599 |||||||||||||||||||||||| |||| | ||||||| ||| || ||| || Sbjct 148662 TTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTT 148603 Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTA 54627 | | ||| || ||||| || |||||||| Sbjct 148602 CGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 113 bits (124), Expect = 5e-20 Identities = 191/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTG-ATCTCATCATTCCATAATTTTC 53114 |||||| || ||| |||| || ||| | || | | |||||||||| ||| | || Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765 Query 53115 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 53174 | ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705 Query 53175 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 53234 || ||||| || ||| | || | || || | ||||||||| ||||||||||| || | Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645 Query 53235 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 53294 |||| || || || ||||| || | |||| | | |||| | ||||| | | | | Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585 Query 53295 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 ||| ||| | || ||||| | ||||||||| Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712248884800