Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq654 113 4e-20 seq355 113 4e-20 seq532 89.7 4e-13 >seq654 Length=87504 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||| | ||| ||||| ||||||||||| ||||| | Sbjct 82869 CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAA 82928 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||| ||||| ||||| ||| | || |||| ||||||||| || Sbjct 82929 AGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGG 82988 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | ||| || ||| | ||| Sbjct 82989 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACC 83048 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| |||||||| | || |||||||| || ||||| Sbjct 83049 TCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| ||||| | || ||| | | || || ||||| ||||| Sbjct 81807 GTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCG 81866 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || |||| ||||||||| || | ||||||||||| |||||| ||| Sbjct 81867 GCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTC 81926 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || || || ||| | || || |||||||||||||| || Sbjct 81927 ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTC 81986 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 81987 TTGACGAAGATCTGCAT 82003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | | ||| | ||||||||| ||||||||||| ||||| || || | Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | || || ||||| ||||| ||| | || |||| |||||| || ||| Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||||| Sbjct 82353 ATTCCTTCCTTGTC 82366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||||||| ||||| ||||| | Sbjct 82532 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 82591 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| ||||| ||||| || | ||||||| ||||||||| || Sbjct 82592 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 82651 Query 21069 ACGCCTTCCTTGTC 21082 | ||||| ||||| Sbjct 82652 ATACCTTCTTTGTC 82665 >seq355 Length=2689 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| || | ||| | ||| ||||| ||||||||||| ||||| | Sbjct 1917 CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAA 1976 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||| ||||| ||||| ||| | || |||| ||||||||| || Sbjct 1977 AGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGG 2036 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | ||| || ||| | ||| Sbjct 2037 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACC 2096 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| |||||||| | || |||||||| || ||||| Sbjct 2097 TCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||||| || || | | || || ||||| ||||| Sbjct 171 GTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCG 230 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | ||||||| ||||||||| || | |||||| ||||| ||| || ||| Sbjct 231 GCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTC 290 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||| || || || ||| | || || |||||||||||||| || Sbjct 291 ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTC 350 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 351 TTGACGAAGATCTGCAT 367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || ||||| || || ||||| ||||||| Sbjct 369 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 428 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| ||||| || | ||||||| ||||||||| || Sbjct 429 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 488 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| || ||||| | | ||| ||| || || || | Sbjct 489 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 548 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||||||||| || ||||| || || ||||| Sbjct 549 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || ||||| || || ||||| ||||||| Sbjct 597 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 656 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| ||||| || | ||||||| ||||||||| || Sbjct 657 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 716 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| ||||| ||| || ||||| | | ||| ||| || || || | Sbjct 717 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 776 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||||||||| || ||||| || || ||||| Sbjct 777 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || ||||| || || ||||| ||||| | | Sbjct 825 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 884 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || || ||||| ||||| || | || |||| ||||||||| || Sbjct 885 AAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 944 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | ||| ||| || || || | Sbjct 945 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 1004 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||||||||| || ||||| || || ||||| Sbjct 1005 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | | ||| | ||||||||| ||||||||||| ||||| || || | Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | || || ||||| ||||| ||| | || |||| |||||| || ||| Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||||| Sbjct 1401 ATTCCTTCCTTGTC 1414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | || || | ||| | ||||||||||||||| ||||| ||||| | Sbjct 1580 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1639 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||| ||||| ||||| || | ||||||| ||||||||| || Sbjct 1640 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 1699 Query 21069 ACGCCTTCCTTGTC 21082 | ||||| ||||| Sbjct 1700 ATACCTTCTTTGTC 1713 >seq532 Length=2515153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| ||| | |||||||||||| || ||||| ||||| | Sbjct 2299434 CCACCTCGGAGTCGGAGGACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2299493 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||| ||||| || || || | || |||| ||||||||| || Sbjct 2299494 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGG 2299553 Query 21069 ACGCCTTCCTTGTC 21082 | ||||||||||| Sbjct 2299554 ATTCCTTCCTTGTC 2299567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422252715682160