Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq207 486 6e-133 >seq207 Length=4687 Score = 486 bits (538), Expect = 6e-133 Identities = 1178/1756 (67%), Gaps = 36/1756 (2%) Strand=Plus/Minus Query 22536 GGTAATCCGGCGGTATTCATGCAGCGGTTCACGATATTACGGTCGATGCCCTCTGCTTCA 22595 || ||| |||||| || || |||||| | | || ||||| || || || ||| Sbjct 3652 GGCAATTTGGCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCA 3593 Query 22596 GCCAGGGCTTTAACGTTACCATCAAATTCTTTCAG---TCGGC--GCAAGTACCGTTTCC 22650 ||||| || || || ||| ||||||| ||| | ||||| ||| || || | | Sbjct 3592 GCCAGCGCAGAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCA--TAACGCTGAC 3535 Query 22651 CGCGTTCGTATGCACTGGTTGGCCGATAGTCGTTACCCAA-CTGTGACAACTGCTGC-AT 22708 | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||| || || Sbjct 3534 CACGTTCATAAGCACTTGTTGGGCGATAATCGTTACCCAATCTG-GATAA-TGCAGCCAT 3477 Query 22709 TTGTTCATCATCCAGCTCTCCAACGAGAACCCGATAATCGCTACCAGTGATGATGGCTGT 22768 || |||||||||||||| ||||| ||||| |||||||| || | || | || | Sbjct 3476 CTGCTCATCATCCAGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGC 3417 Query 22769 TTTGCGGCGGCGTGAGCCATCGGCAATTTCGATAATGCCTGACGTCCTTCTGGCGAACGC 22828 ||| || ||||| |||||||||||||| || | || || |||| ||||||| Sbjct 3416 TTTACGACGGCGACTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGC 3357 Query 22829 GGGGTTCTGCTGTCCTGA-AGTGAGGAATGAAGGGATAAGGTCGGCCAGCGCTGATTCGT 22887 || |||| || || | ||| || || |||||||| || || |||| || || Sbjct 3356 CGGTGTCTGTTGACCAGTCAGT-AGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAG 3298 Query 22888 TCAGCAATTCCTGATCACGTTCATTACCGAGCCAAACCATTGTGGCCTTTTCGACTTTAT 22947 | |||| ||||| |||||||||||||| ||| ||| | || ||| || || ||| Sbjct 3297 TAAGCAGCTCCTGGTCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTAT 3238 Query 22948 CAGCAGGAATGGTTTCCAGCTTAAAAGTCACGTTGCGGCCGCAAACCGGTAGCGTAATGC 23007 || | | | ||| || |||| |||| | || || || || || | |||||| Sbjct 3237 CACCCCGGAGCACTTCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGG 3178 Query 23008 TATTCCCGGACAACGAACTTAATTTGCTCTGTAAGTCGC-CAACCATCGGCGAAACCGAT 23066 ||| ||| ||| | || ||| || | ||| ||| | || ||| Sbjct 3177 CATTACCG-----CGAGCCA---TTACTCC-TACG-CGCGCAATTAACGAATCCACCATC 3128 Query 23067 GGCGCTTTTTGCGGCGCATTATGGTTATTGCTCATGAACGTTTCGATGTTGGGCGCATTT 23126 || || | | | || || | | | ||| | || || | ||| ||| || | Sbjct 3127 GGGGCAGCTGGTGTCG-ATAACGAAGTATCTTCA--ACCGGTTGAGTATTGAGCGTATGT 3071 Query 23127 TTT--AATATAGAGCG-ATTCTTCATAGT-TAGTCCTCCCAACGAGGTTTGATTAGATCT 23182 ||| |||| ||| | |||||| | || || ||||| || ||||| || ||| Sbjct 3070 TTTGGAATAACAGGCGCACGCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGA 3012 Query 23183 TCGAAAATTTCTTTGCAGACTGGCTCCCAGATTTCCACTGCATTTCGCCAGGCATTAAGC 23242 ||||||||||| |||||||| || ||||| || | ||||||| ||||||| | Sbjct 3011 TCGAAAATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTT 2952 Query 23243 GTTGAGCGTTGATTTGCTGCTTGCTCAAATACGGTGCGCATCTTGATCTGGCCTTTACCA 23302 | |||||||||| || || ||||| || || | |||| |||||| ||||||||| Sbjct 2951 GAAGAGCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCA 2892 Query 23303 ACTTCATCAGTGACCCGCACGACCTGTCGCAAGACCATAGCTCCCCAGGTATTTCGAATC 23362 |||||||| || | || || || | | | ||||| |||||||| || ||||| Sbjct 2891 ACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATT 2832 Query 23363 TGCTCCTCCATCCACCGGGACTGATTGCCGTTAGTAAGGCTGTATTTGGTCAGGAGCAGG 23422 ||||||||||||||| |||||||| ||| ||| || |||||||||||| || | | Sbjct 2831 TGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATA 2772 Query 23423 CGGACGACAGGTTCAAAGCCGCCCAAATCGACGGTTTCAAGCAGGTCGAGCAGCATGGTG 23482 || || |||| || || || | ||| ||| | | ||||| || | ||||| | Sbjct 2771 CGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCG 2712 Query 23483 AAAAACTGAAGAACTGATGCATAGTCGAACAGCTCTGCAGGGGTTGCTACCACGATGACG 23542 |||||||| || | || | ||||| |||| ||| ||||| || | || | | || Sbjct 2711 AAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACA 2652 Query 23543 TCAGCAGCACAGACAACGTTAATAGTTCCCGTACCCAAGTTTGGCGCGCTGTCTATGACG 23602 ||||||||||| || || ||||| || || |||||| ||| ||||||||||| || || Sbjct 2651 TCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACT 2592 Query 23603 ATAATGTCGTAGTTATCCCATACAGACTCGATAGCAGCACGAAGCATCAGATGAGG-GGG 23661 || | || |||| || |||| || || || || |||||||| || || | Sbjct 2591 ATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCG 2532 Query 23662 ATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCAGATCTGTTTCAATGCGGTGAAGGGC 23721 || || || || || || | | ||| | || |||||||| ||||| || || Sbjct 2531 GTG-GGCAGTTTACCTTCATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGC 2473 Query 23722 CAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGCATGTTGGTTTTATCGCATATTCAGC 23781 ||| ||| || || ||||| || ||||||||||| || || ||||| ||||| | Sbjct 2472 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 2413 Query 23782 GTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGTGTATCGTCTGCGTGAATGTGCAAAT 23840 | ||| | ||| ||| || || || || || || || || ||||| ||||| || | || Sbjct 2412 ATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGAT 2354 Query 23841 CAGGAACGTAACCGTGGTACATAGATGCAGTCCCTTGCGGGTCGTTCCCTTCAACGAGTA 23900 | || || | ||||| ||||| || || || || || |||||||| ||||| ||||| | Sbjct 2353 CTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCA 2294 Query 23901 GGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCCTGGTGTACTGCAGATGAGGTTTTAT 23960 || || |||| | || || | || || | || || | | ||||||||| | Sbjct 2293 AAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGT 2234 Query 23961 AAACCCCTCCCTTGTGTGACATAACGGAAAGTACAACCGGGTTTTTATCGTCAGGTCTTT 24020 |||| || || || || | ||| | || || | || |||| | | Sbjct 2233 AAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 2174 Query 24021 GGTTTGGGTTACCAAACACACTCCGCATATGGCTAATTTGGTCAATTGTGTAGCCAGCGC 24080 | | | ||||||||||| |||||||| ||||||| |||||||| || ||| | | Sbjct 2173 GCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 2114 Query 24081 GACGTTCTACTCGGCCCCTCATCTCAAAATCAGGAGCCGGTAGACGACCAGCTTTTTCCG 24140 | | || || || || | || || | ||| || |||||| || || ||||| || | Sbjct 2113 GTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 2054 Query 24141 CGTCTCTGATAGCCTGCGGTGTTACGCCGATCAGGTCTGCAACTTCTGTTATACCCCAGC 24200 | |||||||||||||| | | || || | | || || |||| ||| | ||||| Sbjct 2053 CATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGC 1994 Query 24201 GGCGAGTAATACGACGCGCTTCCGGGCTGTCATCGCCGAACTGTGCGATGGCAATAGCGC 24260 | || || || | |||||||||||||||||| |||||||| ||||| ||||| Sbjct 1993 GCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCT 1934 Query 24261 GCGTCATTTCCTGACC 24276 ||||||||| ||||| Sbjct 1933 TCGTCATTTCATGACC 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148276181384440