Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq355 134 1e-26 seq654 129 5e-25 seq532 96.9 3e-15 >seq355 Length=2689 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||||||||||||||||| || | ||| || |||||| ||||| Sbjct 1941 TGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGC 2000 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || ||||||| |||||||| || || || || || |||||||| || || Sbjct 2001 TTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTG 2060 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | |||| |||||| | ||||||||||| || | ||||||||||| Sbjct 2061 GCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTG 2120 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 ||||| || ||||| ||||||||| Sbjct 2121 AGAGTCTTGACAAAGATCTGCATG 2144 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || || ||||| ||| || ||||| || ||| Sbjct 1083 GTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCA 1142 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| || || || || || |||||||| ||||| || Sbjct 1143 GCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTG 1202 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | | |||||||||| ||| | || ||||| |||| ||| Sbjct 1203 ACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTT 1262 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 1263 TTGACGAAAATCTGCAT 1279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | || | |||||||| ||||| |||||||||||| Sbjct 1279 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 1338 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || ||||| || ||||| ||||||| ||||||||||| || | Sbjct 1339 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 1398 Query 118630 GTATGCCCTCCTTGTC 118645 | || || |||||||| Sbjct 1399 GAATTCCTTCCTTGTC 1414 >seq654 Length=87504 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||||||||||||||||||||| || | ||| || |||||| ||||| Sbjct 82893 TGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGC 82952 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || || ||||||| |||||||| || || || || || |||||||| || || Sbjct 82953 TTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTG 83012 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | |||| |||||| | ||||||||| | || | ||||||||||| Sbjct 83013 GCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTG 83072 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 ||||| || ||||| ||||||||| Sbjct 83073 AGAGTCTTGACAAAGATCTGCATG 83096 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| || || ||||| ||| || ||||| || ||| Sbjct 82035 GTCGACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCA 82094 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| || || || || || |||||||| ||||| || Sbjct 82095 GCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTG 82154 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | | |||||||||| ||| | || ||||| |||| ||| Sbjct 82155 ACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTT 82214 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 82215 TTGACGAAAATCTGCAT 82231 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | || | |||||||| ||||| |||||||||||| Sbjct 82231 TACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG 82290 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || ||||| || ||||| ||||||| ||||||||||| || | Sbjct 82291 AGAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGG 82350 Query 118630 GTATGCCCTCCTTGTC 118645 | || || |||||||| Sbjct 82351 GAATTCCTTCCTTGTC 82366 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||||||||| ||||||||||| | ||| || || |||||||| Sbjct 83121 TGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTGC 83180 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||| |||| || |||||||| || || || || || |||||||| Sbjct 83181 TTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTC 83230 >seq532 Length=2515153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| || || |||||||| ||| | ||| || ||||||| Sbjct 2299452 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCG 2299511 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| ||||||| |||||||| || ||||| || || |||||||| Sbjct 2299512 AGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTC 2299567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823737991920