Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq654 111 1e-19 seq355 111 1e-19 >seq654 Length=87504 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| ||||| || ||||||||||| || || ||| | || Sbjct 82884 AGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCC 82943 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| || || ||||| ||||||||||| | |||| || |||||||| Sbjct 82944 TCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCT-TCCTTGTC 83002 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 83003 CTGGATCTTG-GCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGG 83061 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||||||||||| || |||||||||||||| Sbjct 83062 TTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| ||||||||||||||| || || || | || || | ||||||||| ||||| Sbjct 81813 TCTTTCTGGATGTTGTAGTCGGACAAGGTG-CGACCATCTTCAAGCTGCTTGCCGGCGAA 81871 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| ||||| ||| | | Sbjct 81872 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTT 81931 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | | ||| || || | |||||| || |||||||| | ||| || || Sbjct 81932 GTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGAC 81991 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 81992 GAAGATCTGCAT 82003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| ||||||||||| ||| || || || | || || | ||||||||| ||||| Sbjct 82041 TCTTTCTGGATGTTGTAGTCTGACAAGGTG-CGACCATCTTCAAGCTGCTTGCCAGCGAA 82099 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| || || ||| | | Sbjct 82100 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 82159 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| | |||||| || | |||||||| ||||| || | ||||| || Sbjct 82160 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 82219 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 82220 GAAAATCTGCAT 82231 >seq355 Length=2689 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| ||||| || ||||||||||| || || ||| | || Sbjct 1932 AGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCC 1991 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | ||||||||| || || ||||| ||||||||||| | |||| || |||||||| Sbjct 1992 TCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCT-TCCTTGTC 2050 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 ||||| ||||| | || | || | || | | ||||| || | ||||||| Sbjct 2051 CTGGATCTTG-GCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGG 2109 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||||||||||| || |||||||||||||| Sbjct 2110 TTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| ||||||||||||||| || || || | || || | ||||||||| ||||| Sbjct 861 TCTTTCTGGATGTTGTAGTCGGACAAGGTG-CGACCATCTTCAAGCTGCTTGCCGGCGAA 919 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| ||||| ||| | | Sbjct 920 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTT 979 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | | ||| || || | |||||| || |||||||| | ||| || || Sbjct 980 GTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGAC 1039 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 1040 GAAGATCTGCAT 1051 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||||| ||||||||||| ||| || || || | || || | ||||||||| ||||| Sbjct 1089 TCTTTCTGGATGTTGTAGTCTGACAAGGTG-CGACCATCTTCAAGCTGCTTGCCAGCGAA 1147 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| ||||||||||| || | | |||||||| || || ||| | | Sbjct 1148 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 1207 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| | |||||| || | |||||||| ||||| || | ||||| || Sbjct 1208 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 1267 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 1268 GAAAATCTGCAT 1279 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||| ||| | || |||||||| ||||||||||| || Sbjct 141 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 200 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| ||||| || || ||||||||||| || Sbjct 201 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 260 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| || || ||| | | | | || | || | | ||| || Sbjct 261 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 320 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || |||||||| | ||| || || ||||||||||| Sbjct 321 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || || | || || | ||||||||| ||||| Sbjct 405 TCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAG 464 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | || || ||||| || || ||| | | | Sbjct 465 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTG 524 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||| || |||||||| | ||| || || Sbjct 525 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 584 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 585 AAGATCTGCAT 595 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || || || | || || | ||||||||| ||||| Sbjct 633 TCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAG 692 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| || | || || ||||| || || ||| | | | Sbjct 693 ATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTG 752 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || || | |||||| || |||||||| | ||| || || Sbjct 753 TCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACG 812 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 813 AAGATCTGCAT 823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067038825600