Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq563 87.8 4e-12 >seq563 Length=403863 Score = 87.8 bits (96), Expect = 4e-12 Identities = 189/275 (69%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 |||| |||||| | | ||| | |||||| || || || ||| ||| | | |||||| Sbjct 148566 GATTACGAGTACAACTACTTCGGTTTCAAGACTCTCGAACGATCATATTTGATGAAAATT 148625 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 ||||| |||| | ||| || |||||||||||| ||||| ||| | || || || ||| Sbjct 148626 GATGGAAAGACGATTGAAAGACCTCAGCACATGTTAATGCGTGTGTCCGTTGGTATCCAC 148685 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAG-TGAACGCTGGATGAC 248987 || ||||| || || || ||||| |||| | ||||| | || | | | || Sbjct 148686 GGTGAGGACATTGACGCCGCTCTTGAGACCTACAACTTCATGAGCTTAAAG-TACTTTAC 148744 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCG-TGC 249045 || || | ||||| || ||||| | || || | || || | ||| || || | ||| Sbjct 148745 CCACGCTTCTCCGACTCTTTTCAATTCTGGCACTCCTCGACCA-CAGATG-TCTAGCTGC 148802 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGG 249080 || ||| |||| ||||| ||||| ||| | || || Sbjct 148803 TTCCTTGTTGCGATGCAGGACGATTCTATAGAAGG 148837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073749065383680