Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq654 86.0 5e-12 seq355 86.0 5e-12 >seq654 Length=87504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || || | ||||| || || ||||| || ||||||||||| | | Sbjct 82005 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 82064 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || ||||| || |||| |||| || || || || Sbjct 82065 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 82124 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| |||||| | | | | |||||| || ||| Sbjct 82125 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 82184 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 82185 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 >seq355 Length=2689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| || || | ||||| || || ||||| || ||||||||||| | | Sbjct 1053 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 1112 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | || ||||| || |||| |||| || || || || Sbjct 1113 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 1172 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| |||||| | | | | |||||| || ||| Sbjct 1173 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 1232 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 1233 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379338174698700