Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq355 82.4 6e-11 >seq355 Length=2689 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || || ||||||||||| ||||| || | || || ||| | Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | || |||| ||||| | ||||||||| | || |||||| Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || || | || | || ||||| || || |||||| ||| | || |||| | Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCA 25061 || ||||||||| |||| ||||| || || | ||| | || || ||||| Sbjct 187 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGGTCA 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418297576419200