Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq563 125 9e-24 >seq563 Length=403863 Score = 125 bits (138), Expect = 9e-24 Identities = 377/577 (65%), Gaps = 49/577 (8%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||| || | ||| |||| || | |||| || || || || || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| | || | |||| || ||| |||||| ||| ||| | ||| |||| Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTAAAGTGCATAGACGTGAGTGTTCCATACTTCGG 151005 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 | ||| | ||||||||| | ||| || || |||||||| | ||| | || ||||| Sbjct 151004 TTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAGC 150945 Query 62216 CATTTTTATGATCGTCTTTTGTGCA--ATTTCCCAAATAGTTTTATA----------AAC 62263 ||||| | || ||| |||| ||| |||||||||| |||| | || | Sbjct 150944 CATTTGAA-GAACGT-TTTTCTGCTTGATTTCCCAAACAGTTCTGTACCGTTCTTTGATG 150887 Query 62264 TC-GCTTA-ATATC----TTCTGG--------------AAG-GTTT------GTATTC-- 62294 || ||| ||||| ||||| ||| |||| | | || Sbjct 150886 TCAGCTGGGATATCCAAGTTCTGATTATCTCGATTAATAAGAGTTTAAGAGCGCAATCAT 150827 Query 62295 ----TGAATGGATCCACCATCTACCATAATCCTATTCTTG-ATCTCATCATTCCATAATT 62349 |||||||| ||| |||| || ||| | || | | |||||||||| ||| | | Sbjct 150826 CACCTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAAT 150768 Query 62350 TTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATA 62409 | | ||||||| | | ||| ||||| |||||||| ||||||||||| || |||| | Sbjct 150767 TGATTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAA 150708 Query 62410 CTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTT 62469 | | || ||||| || ||| | || | || || | |||||||| ||||||||||| | Sbjct 150707 CACGTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCT 150648 Query 62470 GAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC 62529 | ||||| || || || ||||| || | |||| | | |||| | ||||| | | Sbjct 150647 GGGCAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGG 150588 Query 62530 TGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATC 62566 | | ||| ||| | || ||||| | ||||||||| Sbjct 150587 TAACTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Score = 123 bits (136), Expect = 3e-23 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || ||||||||||| || | |||| ||| || | ||| || | || ||||||||| Sbjct 148807 AGGAAGCAGCTAGACATCTGTGGTCGAGGAGTGCCAGAATTGAAAAGAGTCGGAGAAGCG 148748 Query 63693 TGCGTAAACCATTTT----TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 || ||||| | ||| ||| |||| |||| ||||||| ||| | ||| || || Sbjct 148747 TGGGTAAAGTACTTTAAGCTCATGAAGT----TGTAGGTCTCAAGAGCGGCGTCAATGTC 148692 Query 63749 C-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTT 63807 | || | || || || || | ||||||||||||||||||||||||||||||| | | Sbjct 148691 CTCACCG-TGGATACCAACGGACACACGCATTAACATGTGCTGAGGTCTTTCAATCGTCT 148633 Query 63808 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | | ||||||| ||| || ||| ||| | ||| || ||||| || |||||||| Sbjct 148632 TTCCATCAATTTTCATCAAATATGATCGTTCGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807680372800