Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq563 127 3e-24 >seq563 Length=403863 Score = 127 bits (140), Expect = 3e-24 Identities = 191/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 || |||||| ||| ||| ||| || || || ||||||||||| || | ||| | Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT----TCAGAAAGTAG 66511 || || | ||| || | || ||||||||||| ||||| | ||| ||| |||| Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGT-- 148720 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 66570 |||| ||||||| ||| | ||| || ||| || | || || || || | ||||||| Sbjct 148719 --TGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCA 148663 Query 66571 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 66630 |||||||||||||||||||||||| |||| | ||||||| ||| || ||| || Sbjct 148662 TTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTT 148603 Query 66631 CCAAAGTTTTAAAACCAAAATAGTTGTA 66658 | | ||| || ||||| || |||||||| Sbjct 148602 CGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 118 bits (130), Expect = 1e-21 Identities = 192/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG-ATCTCATCATTCCATAATTTTC 65145 ||||||||| ||| |||| || ||| | || | | |||||||||| ||| | || Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765 Query 65146 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 65205 | ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705 Query 65206 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 65265 || ||||| || ||| | || | || || | ||||||||| ||||||||||| || | Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645 Query 65266 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 65325 |||| || || || ||||| || | |||| | | |||| | ||||| | | | | Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585 Query 65326 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 ||| ||| | || ||||| | ||||||||| Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Score = 86.0 bits (94), Expect = 8e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||| || | ||| |||| || | |||| || || || || || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| | || | |||| || ||| |||||| ||| ||| | ||| |||| Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTAAAGTGCATAGACGTGAGTGTTCCATACTTCGG 151005 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 | ||| | ||||||||| | ||| || || |||||||| | ||| | || ||||| Sbjct 151004 TTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAGC 150945 Query 65009 CATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTT 65048 || ||| | || ||| ||| || |||||||||| |||| Sbjct 150944 CA-TTTGAAGAACGTTTTTCTGCTTGATTTCCCAAACAGTT 150905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162433778400