Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02]
1,260 sequences; 70,471,451 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq563 127 3e-24
>seq563
Length=403863
Score = 127 bits (140), Expect = 3e-24
Identities = 191/268 (71%), Gaps = 10/268 (4%)
Strand=Plus/Minus
Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455
|| |||||| ||| ||| ||| || || || ||||||||||| || | ||| |
Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT----TCAGAAAGTAG 66511
|| || | ||| || | || ||||||||||| ||||| | ||| ||| ||||
Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGT-- 148720
Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 66570
|||| ||||||| ||| | ||| || ||| || | || || || || | |||||||
Sbjct 148719 --TGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCA 148663
Query 66571 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 66630
|||||||||||||||||||||||| |||| | ||||||| ||| || ||| ||
Sbjct 148662 TTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTT 148603
Query 66631 CCAAAGTTTTAAAACCAAAATAGTTGTA 66658
| | ||| || ||||| || ||||||||
Sbjct 148602 CGAGAGTCTTGAAACCGAAGTAGTTGTA 148575
Score = 118 bits (130), Expect = 1e-21
Identities = 192/274 (70%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG-ATCTCATCATTCCATAATTTTC 65145
||||||||| ||| |||| || ||| | || | | |||||||||| ||| | ||
Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765
Query 65146 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 65205
| ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || |
Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705
Query 65206 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 65265
|| ||||| || ||| | || | || || | ||||||||| ||||||||||| || |
Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645
Query 65266 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 65325
|||| || || || ||||| || | |||| | | |||| | ||||| | | | |
Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585
Query 65326 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359
||| ||| | || ||||| | |||||||||
Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551
Score = 86.0 bits (94), Expect = 8e-12
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888
||| || | ||| |||| || | |||| || || || || || ||||||||||| ||
Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065
Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948
||||| | || | |||| || ||| |||||| ||| ||| | ||| ||||
Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTAAAGTGCATAGACGTGAGTGTTCCATACTTCGG 151005
Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008
| ||| | ||||||||| | ||| || || |||||||| | ||| | || |||||
Sbjct 151004 TTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAGC 150945
Query 65009 CATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTT 65048
|| ||| | || ||| ||| || |||||||||| ||||
Sbjct 150944 CA-TTTGAAGAACGTTTTTCTGCTTGATTTCCCAAACAGTT 150905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658162433778400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |