Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq654 102 8e-17 seq355 102 8e-17 >seq654 Length=87504 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | || | || ||||||| || |||||||| || ||||| || || Sbjct 81546 TGACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCC 81605 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| | ||||| ||||| || || || |||| || || ||||| || || Sbjct 81606 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 81665 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| |||||| || | | ||| | ||||||| | ||| Sbjct 81666 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCA 81725 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | || || ||||| | ||||| ||||| || |||||| Sbjct 81726 ACCTCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCATA 81776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||| |||||||| || ||||| || ||| || |||| ||||| ||||| Sbjct 81800 GTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTG 81859 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || || |||| || || ||||| || || || || ||||| ||||| ||| || Sbjct 81860 CTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTT 81919 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || || || |||| || | |||||||||||| Sbjct 81920 AGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGT 81979 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 81980 TAAAGTCTTGACGAAGATCTGCATA 82004 >seq355 Length=2689 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | || | || ||||||| || |||||||| || ||||| || || Sbjct 138 TGACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCC 197 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | |||| | ||||| ||||| || || || |||| || || ||||| || || Sbjct 198 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 257 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || |||||||||||||| |||||| || | | || | ||||| | || || Sbjct 258 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCA 317 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| || | |||||||||||| || || || ||||| || |||||| Sbjct 318 ACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCATA 368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| |||||||| || ||||| || || | |||| | ||||| ||||| Sbjct 393 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 452 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || || ||||| || || || |||||||||||||| |||||| Sbjct 453 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 512 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || || || |||| || | |||||||||||| Sbjct 513 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 572 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 573 AAAGTCTTGACGAAGATCTGCATA 596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| |||||||| || ||||| || || | |||| | ||||| ||||| Sbjct 621 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGC 680 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || || ||||| || || || |||||||||||||| |||||| Sbjct 681 TTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTG 740 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || || || |||| || | |||||||||||| Sbjct 741 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 800 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 801 AAAGTCTTGACGAAGATCTGCATA 824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| |||||||| || ||||| || ||| || |||| ||||| ||||| Sbjct 849 TGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGC 908 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||| || || ||||| || || || || ||||| ||||| ||| || Sbjct 909 TTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTA 968 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | || || || |||| || | |||||||||||| Sbjct 969 GCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTT 1028 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || || || ||||| || |||||| Sbjct 1029 AAAGTCTTGACGAAGATCTGCATA 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056186992000