Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq563 122 1e-22 >seq563 Length=403863 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 80305 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 || || ||||||||||| || | ||| ||| || | ||| || | || ||||||||| Sbjct 148807 AGGAAGCAGCTAGACATCTGTGGTCGAGGAGTGCCAGAATTGAAAAGAGTCGGAGAAGCG 148748 Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CA 80423 || ||||| | ||| || | ||||| ||||||| ||| | || || ||| || Sbjct 148747 TGGGTAAAGTACTTTAAGCTCATGAAGTTGTAGGTCTCAAGAGCGGCGTCAATGTCCTCA 148688 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 | || || || || | ||||||||||||||||||||||||||||||| |||| Sbjct 148687 CCG-TGGATACCAACGGACACACGCATTAACATGTGCTGAGGTCTTTCAATCGTCTTTCC 148629 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 || ||||||| ||| || ||| ||| | ||| || ||||| || |||||||| Sbjct 148628 ATCAATTTTCATCAAATATGATCGTTCGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 113 bits (124), Expect = 6e-20 Identities = 206/299 (69%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG-ATCTCTTCATTCCATAATTTTC 79024 ||||||||| ||| |||| || ||| | || | | ||||| |||| ||| | || Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765 Query 79025 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 79084 | ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705 Query 79085 TCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAG 79144 || ||||| || ||| | || | || || | || ||||| ||||||||||| || | Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645 Query 79145 CAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGA 79204 |||| || || |||||||| || | |||| | | |||| | ||||| | | | Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263 ||| ||| | || ||||| ||||||||||||| || |||| ||| || ||| Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATCAGTGGGAGTAACACCCCACAGGTCA 150526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||| || | ||| |||| || | |||| || || || || || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 78768 CGTTTTTAGACCGAGACTCCATCC-GTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 ||||| | || | |||| || ||| || |||||| ||| ||| | ||| ||| Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTA-AAGTGCATAGACGTGAGTGTTCCATACTTCG 151006 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | ||| | ||||||||| | ||| || || |||||||| | ||| | || |||| Sbjct 151005 GTTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAG 150946 Query 78887 CCATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTT 78927 ||| ||| | || ||| ||| || |||||||||| |||| Sbjct 150945 CCA-TTTGAAGAACGTTTTTCTGCTTGATTTCCCAAACAGTT 150905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257487266400