Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq563 122 1e-22 >seq563 Length=403863 Score = 122 bits (134), Expect = 1e-22 Identities = 187/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 || |||||| ||| ||| ||| || || || ||||||||||| || | ||| | Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || | ||| || | || ||||||||||| ||||| | ||| || | ||| Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGTTG 148718 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || ||||||| ||| | || || ||| || | || || || || | ||||||||||| Sbjct 148717 TAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCATTAA 148659 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||||||||||| |||| || ||||||| ||| || ||| ||| | Sbjct 148658 CATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTTCGAG 148599 Query 72597 AGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| || |||||||| Sbjct 148598 AGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 100 bits (110), Expect = 4e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||| ||| |||| | ||| | | |||||| |||| ||| | || | Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATCTGTTGTCGGATCTCATCATCCCAGTAATTGAT 150764 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150763 TTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACACG 150704 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || ||| | || | || || | |||||||| ||||||||||| || || Sbjct 150703 TCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGGC 150644 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 ||| || || || ||||| || | |||| ||| |||| | ||| ||| | Sbjct 150643 AGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAAC 150584 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 ||| ||| | || ||||| | ||||||||| Sbjct 150583 TTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128629557600