Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq594 129 9e-25 >seq594 Length=218677 Score = 129 bits (142), Expect = 9e-25 Identities = 214/306 (70%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 125250 ATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGC 125309 |||||||| || ||| | |||||||| |||||| | | ||||| || | | | | Sbjct 188481 ATCATGATGGAAAACATCCACTCGGAGATGTACGCCAAGCTGATCGAGAATCTGGTCCAC 188422 Query 125310 GATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAA 125368 || || || | || | | ||||| ||||| ||||| ||| ||||| |||| || Sbjct 188421 GACACGAAA-GAGAAGATGGGACTCTTCAACGCGATCGAGACGATGCCGGCTATCAAGAA 188363 Query 125369 AAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 |||||| | |||| | |||||||| || ||| | | | || ||| ||| | Sbjct 188362 GAAGGCTGATTGGGCACTGAAGTGGATCGGTGCCGATGCGCCCT---ACTCCGTTAGAGT 188306 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || ||||||||||| || ||||||||||| || || ||||| |||||||| || Sbjct 188305 CATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCATCTTCTG 188246 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||| | || ||||||||||| | || | |||||| |||| ||| |||| Sbjct 188245 GCTCAAGAAGAGAGGCCTCATGCCCGGCGTAACCTTCTCCAACGAGCTTATTTCTAGAGA 188186 Query 125549 CGAGGG 125554 ||| || Sbjct 188185 CGAAGG 188180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047528317600