Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq207 370 3e-98 >seq207 Length=4687 Score = 370 bits (410), Expect = 3e-98 Identities = 1107/1692 (65%), Gaps = 47/1692 (3%) Strand=Plus/Minus Query 21703 GCAGTTTTAATACAGCGCATAATGATTTTCCGTGAGATATTCTCAGCTTCAGCTAATTTA 21762 || || || |||||||| |||| || || ||||| ||||| || || ||||| | | Sbjct 3643 GCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCAGCCAGCGCA 3584 Query 21763 CTTACATTCCCATCAAAATCATTATGCAGACGGCGTGAATAACGTTGGCCGCGCTCAAAT 21822 | ||| ||| |||| ||||| |||| |||| || |||||| || || || ||| | Sbjct 3583 GAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCATAACGCTGACCACGTTCATAA 3524 Query 21823 GCTGATGTAGGTCGGTAATCGTTACCGATTTGCGACAGCCATGCCATTTGCTCTTCGTCT 21882 || ||| || || ||||||||||| | | || | ||||| ||||| || || Sbjct 3523 GCACTTGTTGGGCGATAATCGTTACCCAATCTGGATAATGCAGCCATCTGCTCATCATCC 3464 Query 21883 AAATCCCCGACAAGGACCCGATAATCTGTTTTTGTAATTATTGCAGTTTTGCGGCGGCGA 21942 | || || || || || |||||||| ||| |||| | |||| ||| || |||||| Sbjct 3463 AGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGCTTTACGACGGCGA 3404 Query 21943 CTGCCATCAGCTACTTCTATAACGCCGTTTACTTCGCGGCCATAGGCAGGGTTCTGCTGG 22002 || ||||| || | |||||| || || |||| || || | || || |||| || Sbjct 3403 CTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGCCGGTGTCTGTTGA 3344 Query 22003 CCAGATAATTTGAATGAAGGGATCAGGTCATCTAATGCGGTTTCAGTTAGCAACTCTTGG 22062 |||| | | || |||||||| || ||||| | |||| ||||| |||| ||| ||| Sbjct 3343 CCAGTCAGTAGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAGTAAGCAGCTCCTGG 3284 Query 22063 TCACGCTCATTCCCGCACCAAACCATTGTGGCCTTATTAACTCTTTCTGCTGGTATGGTT 22122 ||||| ||||| || |||| ||| | || ||| | ||| || || | | | | Sbjct 3283 TCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTATCACCCCGGAGCACT 3224 Query 22123 TTAAGAACAAAATGAACATCACGGCCACAGACAGAAAGGGTAATCTGATTACCG---GTC 22179 | |||| ||| | ||||| || ||||| |||| | ||||| ||||||| | | Sbjct 3223 TCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGGCATTACCGCGAGCC 3164 Query 22180 ATTGCATTAACGCGAGATGTTAACTGTGAAACTGCT---GGAGCAGCTGGTTGCCGAGTT 22236 ||| | ||||| | ||||| ||| | | || ||||||||| | ||| | Sbjct 3163 ATTACTCCTACGCGCGCAATTAAC---GAATCCACCATCGGGGCAGCTGGT-GTCGA--T 3110 Query 22237 ACAGAGCCAGGCGCTGGGACCGTGGTCGCATTATTCATTTCG-ATTTTTGGGGCGTTCTT 22295 | || || || |||| || | | |||| | || || ||| || Sbjct 3109 AACGA---AGTATCTTCAACCG--GTTG-AGTATTGAG--CGTATGTTTTGGA------- 3065 Query 22296 CATTACTGGTGCACGTTTCATT-TCAAATTCTCCCAACGCGGCTTAATTAAGCGATTATA 22354 || || || ||||| |||||| || ||| |||||| || || ||||| | |||| | Sbjct 3064 -ATAACAGGCGCACGCTTCATTATCTAAT-CTCCCAGCGTGGTTTAATCAGACGATCGAA 3007 Query 22355 AATTTCTGCACAAACCGGCTCCCAGATAGCCACAGCATTGCGCCAGGCATTTGGAGTACT 22414 |||||| || || || ||||| |||| | |||||| | ||||||| | | | Sbjct 3006 AATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGA 2947 Query 22415 ACGTTGGTTAGCGGCTTGTTCGAACACAGTTCGCATACGAACTTGTCCTTTACCTACTTC 22474 ||||| | | ||| ||||| || ||||||| ||| || | || |||||||| ||||| Sbjct 2946 GCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTC 2887 Query 22475 GTCAGTTACTCGAACAACTTCTTTAAGGACCATGCTGCCCCAAGCATCACGTATATGGTC 22534 || ||| | || ||||| | ||| || |||||||| ||||| ||||| || || || || Sbjct 2886 ATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTC 2827 Query 22535 ATCCATCCACTGAGATTGGCTACCAACAGCATTACTGAATTTAGTAATCAATACCCTAAC 22594 ||||||||| | || || ||| | ||| ||| |||| |||| ||| | | || Sbjct 2826 CTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTAC 2767 Query 22595 ATCAGGCTCAAACCCGCCGAGGTCCAC--TCCAGCCATAAGATCACGCAACATAGTGAAA 22652 ||||||||| ||||| || || || || | | |||||||| | |||| |||| Sbjct 2766 ATCAGGCTCGAACCCTTTAAGATCAACGTTCTTG--AGCAGATCACGAAGCATATCGAAA 2709 Query 22653 AATTGCAATGTGCTGACATAGTCATAAAGTTCAGCTGGAGTTGGTACAACAATGACATCA 22712 || |||| || | | |||||| | | ||||| || || || |||| | |||||| Sbjct 2708 AACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCA 2649 Query 22713 GCGGCACAAACCACATTTATTGTGCCTATGCCCAAGTTAGGTGCACTGTCTAAAACAACT 22772 || ||||| || ||||| || ||||| || |||| |||||| || ||||| | ||| | Sbjct 2648 GCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATG 2589 Query 22773 ACGTCATAGCTGTCCCATACGGACTCGATTGCAGCACGTAGCATCATGTGCGGTGCTACA 22832 || |||||| | || | || || || || ||||||| ||| || | Sbjct 2588 ACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGGTG 2529 Query 22833 GGGAGCTTTTCGGCATCA----TGCAAAGGATATAATTCAGACTCAATTCGATGGATGGC 22888 || || || | ||||| ||| | ||| |||| ||||| || || | || Sbjct 2528 GGCAGTTTACCTTCATCAAATTTGCCCA----TTAACTCAGTTTCAATACGGTGCAGAGC 2473 Query 22889 CAGACAGGATGGGATTATGTCCAGATTTGGCCAACATGTTGGTTTGATGGCGTACATAGC 22948 ||||||||| || || ||||| || ||||| || || || || || || || | | Sbjct 2472 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 2413 Query 22949 ATCATCACGTTCACCTAAGTAATAAGGGAGTAGAGTTTCGTCTTCGTGGATATGCAAATC 23008 ||| || ||| || | || |||| || ||||| || ||| | || ||||| | ||| Sbjct 2412 ATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATC 2353 Query 23009 AGGTACATACCCATGATAAAGGCTGGCGGTAGCTTGCGGATCTGTAGCATCAATCAATAG 23068 ||||| | || ||||| | ||| || | || || || || | || | | | Sbjct 2352 TGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAA 2293 Query 23069 TACGCGTAAGCCCTGCAATGCTAACCATTGAGCTGTATGCACTGAGGTACT--TGTTTTG 23126 || |||| |||| || || | ||||| ||| || || ||| |||||| Sbjct 2292 AACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAAC--AGAAACTGAGGTTTTG 2235 Query 23127 TATGCGCCACCTTTATGTGCCGCTATAGCCAATACTACTGGGTCTTGCCCATCAGGTCGT 23186 || ||||||||||||| || || | | | || ||| | | |||| ||| Sbjct 2234 TAAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGT 2175 Query 23187 TTCCAGCGTGTACCAAAATGATCCCGAAGGTCGTTAATTTGTTGAATCGTATATCCCGCT 23246 | | || |||||||| ||| || | | |||||||||| ||| ||||| || | Sbjct 2174 CGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACA 2115 Query 23247 CTTTGTGGCACTCTGCCACGTGTAACCATATCCGCAGGTGGCAATTTTCCTGAGTCCTCG 23306 | ||| || | || || | ||||||||| | || | | |||| | |||| Sbjct 2114 CGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCG 2055 Query 23307 CCATTGCGGATGGTCTGAGGGGTTACACCAACTAATTCTGCAGCTTCAGTAATACCCCAT 23366 ||| | ||| | ||||| | || |||||||| || || |||||| || | ||| Sbjct 2054 GCATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAG 1995 Query 23367 CGACGAGTGATT 23378 || || || ||| Sbjct 1994 CGCCGGGTTATT 1983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148160983108120