Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq207 435 1e-117 >seq207 Length=4687 Score = 435 bits (482), Expect = 1e-117 Identities = 785/1140 (69%), Gaps = 12/1140 (1%) Strand=Plus/Minus Query 27456 GCTTCATTAT-TACTCCTCCCAACGTGGCTTAATCAAATCATCAAAAATTTCCTGGCAAA 27514 |||||||||| || || ||||| ||||| ||||||| | ||| |||||||| | ||| | Sbjct 3051 GCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGATCGAAAATTTCATTGCAGA 2993 Query 27515 CAGGCTCCCAAATAGAAACTGCATTTCGCCAGGCGTTAAGTGTTGAGCGCTGATAAGCAG 27574 |||| ||||||||||||| ||||||| |||||| | || ||||| |||| | | Sbjct 2992 CAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGAGCGTTGATCAATGG 2933 Query 27575 CCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACTTCATCTGTCACCCTGA 27634 |||| ||||| || || | ||| || || || || || |||||||| || | | | Sbjct 2932 CCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTCATCCGTTTCACGTA 2873 Query 27635 CAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGCTCTTCCATCCAGCGCG 27694 |||| | |||||||| ||||| | || | || ||||| |||||||| | | Sbjct 2872 CAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTCCTCCATCCACGGGG 2813 Query 27695 ACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAAC 27754 ||||| ||| || | |||||||||||| |||| | ||||| | |||||||| | Sbjct 2812 ACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTACATCAGGCTCGAACC 2753 Query 27755 CGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAGAACTGCAGAACGGATG 27814 | | ||||||| | || || || || ||||||| ||| |||||||| |||| | Sbjct 2752 CTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGG 2693 Query 27815 AATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCGGCAGCACAAACAACAT 27874 || ||||| | ||| ||||| || | || | | | ||| |||||||| || |||| Sbjct 2692 TGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACAT 2633 Query 27875 TAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATAATGTCATAGTTATCCC 27934 ||||||| || | || |||||||| ||||| |||||||| || | ||||||| || Sbjct 2632 TAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAG 2573 Query 27935 ATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGG--CGGATGAGGTAGTTTTCCTTG 27992 || | ||| || || || ||||||||||| || ||| || || ||||| |||| Sbjct 2572 CAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGG-TG-GGCAGTTTACCTT- 2516 Query 27993 GGCGTGGTATT---GCATCAGGTCCGTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGAT 28049 | | ||| ||| | || ||||| |||||||| || |||| ||| || || Sbjct 2515 --CATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAAT 2458 Query 28050 AATGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCGCATTATCACGCTCACC 28109 |||||| || || |||||||| || |||||||| || || ||| || || || Sbjct 2457 AATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACATCGTCCTTTTCCCC 2398 Query 28110 AAGGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAATCAGGCACATAGCCATG 28169 ||| || || || || | ||| || || || ||||| || | ||| || || | || || Sbjct 2397 AAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTG 2338 Query 28170 ATACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTAGAACTCGGTGACCCTG 28229 |||||| ||||| |||||||| || || |||||||| | ||| | ||| || | |||| Sbjct 2337 ATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTT 2278 Query 28230 TAAGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTATAAACGCCACCTTTGTG 28289 | || | ||||| ||| || | | ||||||||| |||||||||||||| || Sbjct 2277 CAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGTAAACGCCACCTTTATG 2218 Query 28290 TGACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTTGATTAGGATTACCGAA 28349 | ||| | | || | |||| | || | | ||| | | |||| || Sbjct 2217 GGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAA 2158 Query 28350 AATGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCACGACGTTCGACGCGGCC 28409 | | |||||||| ||||||| || || ||||| ||| |||| | || || || || Sbjct 2157 CACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCC 2098 Query 28410 ACGCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAGCATCTCTAATCGCTTG 28469 || | ||| | ||| || |||||| ||||| ||||| |||||||| || || || Sbjct 2097 TCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTG 2038 Query 28470 CGGTGAAACACCGATTAAATCAGCAACCTCGGTTATCCCCCAGCGACGAGTAATCTTACG 28529 | ||||| || | |||||| || | || ||| | |||||| || || || || | Sbjct 2037 AGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCT 1978 Query 28530 TGCTTCAGGGCTATCATCACCAAATTGCGCTATGGCAATGGCTTGCGTCATCTCTTGTCC 28589 ||||| ||||| |||||| ||| || || ||||| || || | |||||| || || || Sbjct 1977 CGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164999131163560