Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq654 120 3e-22 seq355 116 3e-21 >seq654 Length=87504 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||| | || | || | |||||| || ||||| | ||| || || Sbjct 82869 CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAA 82928 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| || ||| ||||||| | || ||||| ||||| || Sbjct 82929 AGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGG 82988 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || || ||||| ||| ||||||| ||||| Sbjct 82989 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACC 83048 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||||||||| || || ||||| || |||||||||||||||| Sbjct 83049 TCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATGC 83097 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | || ||||| ||||| ||||||||||| || Sbjct 81848 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTT 81907 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | ||| |||||| | | || || |||| |||||| Sbjct 81908 GTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGAT 81967 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || ||||||||||| Sbjct 81968 CGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || | ||||| | || ||||| ||||| ||||||||||| || Sbjct 82076 ATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTT 82135 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||||||| ||| |||||| | | ||||| || | ||||| Sbjct 82136 GTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGAT 82195 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | ||||| || || |||||||| Sbjct 82196 GGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||| | ||||||||||| |||||||| | ||| |||||| | || ||| || Sbjct 82245 CGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG--AGAGGGTTCGAC 82302 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || ||||| || || ||||||| | || ||||||||||| ||||| ||||| | Sbjct 82303 CATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCT 82362 Query 94911 TGTCATAAA 94919 |||| |||| Sbjct 82363 TGTCCTAAA 82371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || | |||| ||| || Sbjct 81567 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 81626 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | || ||||| ||||| ||||| ||||||||||| | Sbjct 81627 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 81686 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| ||| | | ||||| | || || || | ||||| ||||| Sbjct 81687 ATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTA 81746 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||| || ||||||||||| Sbjct 81747 CCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 >seq355 Length=2689 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | ||| | || | || | |||||| || ||||| | ||| || || Sbjct 1917 CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAA 1976 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| || ||| ||||||| | || ||||| ||||| || Sbjct 1977 AGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGG 2036 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || || ||||| ||| ||||||| ||||| Sbjct 2037 ATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACC 2096 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||||| || || ||||| || |||||||||||||||| Sbjct 2097 TCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATGC 2145 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || | |||| ||| || Sbjct 159 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 218 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | ||||| | || ||||| ||||| ||||| ||||||||||| | Sbjct 219 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 278 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| ||| | ||| |||||| | | || || |||| |||||| || || Sbjct 279 ATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTG 338 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||| || || ||||||||||| Sbjct 339 CCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | || ||||| ||||| ||||| |||||||| Sbjct 440 ATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTT 499 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| ||| | ||| |||||| | | || || |||| |||||| Sbjct 500 GTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGAT 559 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || ||||||||||| Sbjct 560 CGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | || ||||| ||||| ||||| |||||||| Sbjct 668 ATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTT 727 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| ||| | ||| |||||| | | || || |||| |||||| Sbjct 728 GTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGAT 787 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || ||||||||||| Sbjct 788 CGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| | ||||| | || ||||| ||||| ||||||||||| || Sbjct 896 ATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTT 955 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | ||| |||||| | | || || |||| |||||| Sbjct 956 GTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGAT 1015 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || || ||||||||||| Sbjct 1016 CGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || | ||||| | || ||||| ||||| ||||||||||| || Sbjct 1124 ATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTT 1183 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||||||| ||| |||||| | | ||||| || | ||||| Sbjct 1184 GTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGAT 1243 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | ||||| || || |||||||| Sbjct 1244 GGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/129 (78%), Gaps = 4/129 (3%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||||||| | ||||||||||| |||||||| | ||| |||||| | || ||| || Sbjct 1293 CGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGG--AGAGGGTTCGAC 1350 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| || ||||| || || ||||||| | || ||||||||||| ||||| ||||| | Sbjct 1351 CATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCT 1410 Query 94911 TGTCATAAA 94919 |||| |||| Sbjct 1411 TGTCCTAAA 1419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284139413600