Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq545 190 3e-44 seq530 172 9e-39 seq630 168 1e-37 seq538 168 1e-37 seq572 165 1e-36 seq686 159 5e-35 >seq545 Length=868584 Score = 190 bits (210), Expect = 3e-44 Identities = 201/262 (77%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || ||||| ||||||||||| |||||||||||||| || | Sbjct 38840 CGCCAAGCGTCACCGAAAGGTC-CTTCGTGATAACATCCAGGGAATCACCAAGCCTGCCA 38782 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| || ||||| |||||||| ||||||| | |||| ||||||| Sbjct 38781 TTCGACGACTTGCTCGACGAGGTGGTGTCAAGCGAATCTCTGGCCTCATCTACGAAGAGA 38722 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | |||| | ||| ||||||| ||| ||| |||| ||||||| || ||| |||| Sbjct 38721 CTCGAGGTGTTCTCAAGGTCTTCCTTGAGAACGTCATCCGTGATGCTGTCACCTACACCG 38662 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || || |||||||||||| | | ||| ||||||| || | || || |||| Sbjct 38661 AACACGCCAAGCGAAAGACTGTCACCGCTCTCGATGTCGTCTACGCTCTCAAGCGACAAG 38602 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| || || || Sbjct 38601 GCCGAACTCTTTACGGATTCGG 38580 >seq530 Length=3167015 Score = 172 bits (190), Expect = 9e-39 Identities = 197/262 (75%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || ||||| ||||||||||| |||||||||||||| |||| Sbjct 1750441 CGCCAAGCGTCACCGAAAGGTC-CTTCGTGATAACATCCAGGGAATCACCAAGCCCGCTA 1750383 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| || || || |||||||| ||||||| ||| |||| ||||||| Sbjct 1750382 TTCGACGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCTGGTTTGATCTACGAAGAGA 1750323 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | |||| | ||| |||||||| ||| ||| |||| || || || ||| || | Sbjct 1750322 CCCGAGGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACAG 1750263 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| ||||| ||||| | | || ||||||| || | ||||| || | Sbjct 1750262 AACACGCCAAACGAAAGACCGTCACAGCTCTCGACGTCGTCTACGCTCTCAAACGACAGG 1750203 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| || || || Sbjct 1750202 GCCGAACTCTTTACGGATTCGG 1750181 >seq630 Length=113812 Score = 168 bits (186), Expect = 1e-37 Identities = 196/262 (75%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| || || ||||| ||||||||||| ||||| |||||||| || | Sbjct 5400 CGCCAAGCGTCATCGAAAGGTC-CTTCGTGATAACATCCAGGGAATTACCAAGCCCGCAA 5458 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| || || || |||||||| |||| || ||| |||| ||||| | Sbjct 5459 TTCGACGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCCGGCTTGATCTACGAAGAAA 5518 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | |||| | ||| |||||||| ||| ||| |||| ||||| || || || | Sbjct 5519 CCCGAGGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGCGATGCCGTCACTTACACTG 5578 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| |||||||| || | | ||| ||||||| ||| | || || || | Sbjct 5579 AGCACGCAAAACGAAAGACTGTTACTGCTCTCGATGTCGTCTACGCACTCAAGCGACAGG 5638 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| || || || Sbjct 5639 GCCGAACTCTTTACGGATTCGG 5660 >seq538 Length=1333408 Score = 168 bits (186), Expect = 1e-37 Identities = 196/262 (75%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| |||| | ||||| |||||||| || ||||||||||| || | Sbjct 240549 CGCCAAGCGTCACCGCAAGATCA-TGCGAGACAACATCCAGGGCATCACCAAGCCCGCGA 240491 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || ||||| || ||||| |||||||| ||||||| | |||| ||||||| Sbjct 240490 TCCGACGACTTGCTCGACGAGGTGGCGTCAAGCGAATCTCTGGCCTCATCTACGAAGAGA 240431 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | |||| | ||| |||||||| ||| ||| |||| ||| || || ||| |||| Sbjct 240430 CCCGAGGTGTTCTCAAGGTCTTCCTCGAGAACGTCATCCGTGACTCTGTCACCTACACCG 240371 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | | || ||||||| || | || || || | Sbjct 240370 AGCACGCCAAGCGAAAGACCGTCACTGCTCTCGACGTCGTCTACGCTCTCAAGCGACAGG 240311 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| || || || Sbjct 240310 GCCGAACCCTTTACGGATTCGG 240289 >seq572 Length=310451 Score = 165 bits (182), Expect = 1e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| |||||||| ||||| || || || || || ||||| | ||| Sbjct 27405 CTTCGTGATAACATCCAGGGAATCACAAAGCCTGCAATTCGACGACTTGCTCGAAGAGGT 27346 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||| | ||| |||| ||||| | ||| | |||| | ||| ||||| Sbjct 27345 GGTGTCAAGCGAATCTCTAGCTTGATCTACGAAGAAACTCGAGGTGTTCTCAAGGTCTTC 27286 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || ||| || || ||||| ||||| || || ||||||||| Sbjct 27285 CTCGAGAACGTCATCCGCGACGCTGTCACTTACACCGAACACGCCAAGCGAAAGACTGTC 27226 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | | ||| |||||||||| | ||||| || ||||| | |||| || || || Sbjct 27225 ACTGCTCTCGATGTCGTCTATGCTCTCAAACGACAGGGCCGAACTCTTTACGGATTCGG 27167 >seq686 Length=65706 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| | | || ||||| ||||||||||| |||||||||||||| || | Sbjct 65460 CGCCAAGCGTCATCGAAAGGTC-CTTCGTGATAACATCCAGGGAATCACCAAGCCCGCCA 65402 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || || ||||| || || || |||||||| ||||||| ||| |||| ||||||| Sbjct 65401 TTCGACGACTTGCTCGACGAGGCGGTGTCAAGCGAATCTCTGGCTTGATCTACGAAGAGA 65342 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | || ||||||| ||| ||| || | ||||| || ||| |||| Sbjct 65341 CCCGAGGTGTCCTCAAAGTCTTCCTTGAGAACGTCATTCGAGATGCGGTCACCTACACCG 65282 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||| | | || | ||||| || | || || || | Sbjct 65281 AGCACGCAAAGCGAAAGACTGTTACCGCTCTTGACGTAGTCTACGCTCTCAAGCGGCAGG 65222 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | |||| || || || Sbjct 65221 GCCGAACTCTTTACGGATTCGG 65200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074047973180