Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq563 123 3e-23 >seq563 Length=403863 Score = 123 bits (136), Expect = 3e-23 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 63582 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 || || ||||||||||| || | ||| ||| || | ||| || | || ||||||||| Sbjct 148807 AGGAAGCAGCTAGACATCTGTGGTCGAGGAGTGCCAGAATTGAAAAGAGTCGGAGAAGCG 148748 Query 63642 TGCGTAAACCATTTT----TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63697 || ||||| | ||| ||| |||| |||| ||||||| ||| | ||| || || Sbjct 148747 TGGGTAAAGTACTTTAAGCTCATGAAGT----TGTAGGTCTCAAGAGCGGCGTCAATGTC 148692 Query 63698 C-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 | || | || || || || | ||||||||||||||||||||||||||||||| ||| Sbjct 148691 CTCACCG-TGGATACCAACGGACACACGCATTAACATGTGCTGAGGTCTTTCAATCGTCT 148633 Query 63757 TGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 | | ||||||| ||| || ||| ||| | ||| || ||||| || |||||||| Sbjct 148632 TTCCATCAATTTTCATCAAATATGATCGTTCGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 113 bits (124), Expect = 6e-20 Identities = 191/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG-ATCTCATCATTCCATAATTTTC 62301 ||||||||| ||| |||| || ||| | || | | |||||||||| ||| | || Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765 Query 62302 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62361 | ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705 Query 62362 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62421 || ||||| || ||| | || | || || | |||||||| ||||||||||| || | Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645 Query 62422 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62481 |||| || || || ||||| || | |||| | | |||| | ||||| | | | | Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585 Query 62482 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||| ||| | || ||||| | ||||||||| Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Score = 86.0 bits (94), Expect = 8e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 ||| || | ||| |||| || | |||| || || || || || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| | || | |||| || ||| |||||| ||| ||| | ||| |||| Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTAAAGTGCATAGACGTGAGTGTTCCATACTTCGG 151005 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 | ||| | ||||||||| | ||| || || |||||||| | ||| | || ||||| Sbjct 151004 TTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAGC 150945 Query 62165 CATTTTTATGATCGTCTTT-TGTGGAATTTCCCAAATAGTT 62204 || ||| | || ||| ||| || |||||||||| |||| Sbjct 150944 CA-TTTGAAGAACGTTTTTCTGCTTGATTTCCCAAACAGTT 150905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937388581600