Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq563 86.0 2e-11 >seq563 Length=403863 Score = 86.0 bits (94), Expect = 2e-11 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 363446 TTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTG 363505 ||||| | || ||||| |||||||||||||| | |||||||||| | ||| ||| Sbjct 148639 TTGAAAGACCTCAGCACATGTTAATGCGTGTGTCCGTTGGTATCCACGGTGAGGACATTG 148698 Query 363506 ATGCCGCGATTGAAACATATAAGCTTCTAAGTGC-TCGTGTA-TTCACGCACGCCACGCC 363563 | ||||| |||| || || || |||| | | || | ||| || || ||||| | || Sbjct 148699 ACGCCGCTCTTGAGACCTACAA-CTTC-ATGAGCTTAAAGTACTTTACCCACGCTTCTCC 148756 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 || | | |||| |||| |||| | |||||||||||| ||||| ||| | || Sbjct 148757 GACTCTTTTCAATTCTGGCACTCCTCGACCACAGATGTCTAGCTGCTTCCTTGTTGCGAT 148816 Query 363624 GAAGGACGATTCCATCGAGGGTA 363646 | |||||||||| || || |||| Sbjct 148817 GCAGGACGATTCTATAGAAGGTA 148839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303332558985320