Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq654 131 2e-25 seq355 131 2e-25 seq532 93.3 4e-14 >seq654 Length=87504 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | |||||||| || || |||||||| || | Sbjct 82005 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 82064 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 82065 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 82124 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||| ||||| | || | ||| |||| || |||| Sbjct 82125 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 82184 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || | ||||| |||||||||||||| Sbjct 82185 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||| ||||| || || |||||||| || | |||||| Sbjct 81561 CGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCA 81620 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| |||| | ||||||||||| || || || ||||||||| Sbjct 81621 TCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTG 81680 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||| | | || | || |||| | ||| | |||| ||| | Sbjct 81681 TCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATT 81740 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||||||||| || ||||| ||||| |||||||| Sbjct 81741 GTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||||||||| |||||||| ||| Sbjct 82532 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 82591 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 82592 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 82651 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 82652 ATACCTTCTTTGTC 82665 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || | ||| | || ||||| |||||||||||||| || Sbjct 82868 GCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGA 82927 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 82928 AAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGG 82987 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || |||| | ||| | || || | | ||||| Sbjct 82988 GATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGAC 83047 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| ||||| ||||| || || || ||||||||| Sbjct 83048 CTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 83096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 |||||||| || || |||||||| ||| || |||||| || || ||||||||||| Sbjct 81807 GTCGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCG 81866 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||||||||| || || || ||||| ||||| ||| || ||| Sbjct 81867 GCGAAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTC 81926 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | || || | || | || | || || ||||||| ||| Sbjct 81927 ACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTC 81986 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 81987 TTGACGAAGATCTGCAT 82003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | ||| | || ||||||||||| |||||||||||| Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | |||||||| || || || Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 82353 ATTCCTTCCTTGTC 82366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | ||| | |||||||| ||||| ||||||||||| Sbjct 83096 GCCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGA 83155 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 83156 AAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGG 83215 Query 131127 GATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 83216 AATTCCTTCCTTGTC 83230 >seq355 Length=2689 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | |||||||| || || |||||||| || | Sbjct 1053 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 1112 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 1113 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 1172 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||||| ||||| | || | ||| |||| || |||| Sbjct 1173 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 1232 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || | ||||| |||||||||||||| Sbjct 1233 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||||||||| |||||||| ||| Sbjct 1580 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1639 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1640 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 1699 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 1700 ATACCTTCTTTGTC 1713 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || | ||| | || ||||| |||||||||||||| || Sbjct 1916 GCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGA 1975 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 1976 AAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGG 2035 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || |||| | ||| | || || | | ||||| Sbjct 2036 GATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGAC 2095 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| ||||| ||||| || || || ||||||||| Sbjct 2096 CTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCATG 2144 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | |||||||| || || |||||||| || Sbjct 369 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 428 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 429 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 488 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | || | ||| || | || || | Sbjct 489 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 548 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 549 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | |||||||| || || |||||||| || Sbjct 597 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 656 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 657 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 716 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | || | ||| || | || || | Sbjct 717 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 776 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 777 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | |||||||| || || |||||||| ||| | Sbjct 825 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 884 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 885 AAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 944 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | ||| || | || || | Sbjct 945 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 1004 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||||| ||| || ||||| |||||||| Sbjct 1005 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||| ||||| || || |||||||| || | |||||| Sbjct 153 CGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCA 212 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| |||| | ||||||||||| || || || ||||||||| Sbjct 213 TCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTG 272 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||| | | || | ||| || | || || | || | || | Sbjct 273 TCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATC 332 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||||| ||| || ||||| |||||||| Sbjct 333 GTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | ||| | || ||||||||||| |||||||||||| Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| | |||||||| || || || Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 1401 ATTCCTTCCTTGTC 1414 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | ||| | |||||||| || || ||||||||||| Sbjct 2144 GCCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGA 2203 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || ||||||||||| ||| |||| | ||||||||||| || || Sbjct 2204 AAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGG 2263 Query 131127 GATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 2264 AATTCCTTCCTTGTC 2278 >seq532 Length=2515153 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || ||||| | || |||||||| || |||||||| ||| Sbjct 2299434 CCACCTCGGAGTCGGAGGACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 2299493 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| | ||||||||||| |||||| Sbjct 2299494 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGG 2299553 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 2299554 ATTCCTTCCTTGTC 2299567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005365798400