Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq861 136 3e-27 seq332 136 3e-27 seq952 104 2e-17 seq539 86.0 4e-12 >seq861 Length=29000 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 2215 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 2274 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2275 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2309 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 22963 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 23022 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 23023 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 23057 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 18646 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 18705 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 18706 ATCAGTATTTAGCTTTA 18722 >seq332 Length=2908 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 382 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 441 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 442 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 476 >seq952 Length=22710 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3816 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 3757 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 3756 ATCAGTATTTAGCTTTA 3740 >seq539 Length=1154401 Score = 86.0 bits (94), Expect = 4e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| |||||||||||||||| ||||| |||| |||||| || || || | ||||| Sbjct 678828 GACCCGTTCTACCGCTACAAGATGCCCGGCATAGTCGCCAAAGTTGAAGGCCAAGGAAAT 678887 Query 6255 GGTATTAAAACCGTCATTGTCAACATG 6281 ||||| ||||| ||||||||||||||| Sbjct 678888 GGTATCAAAACGGTCATTGTCAACATG 678914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334942056467060