Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq563 127 3e-24 >seq563 Length=403863 Score = 127 bits (140), Expect = 3e-24 Identities = 191/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 || |||||| ||| ||| ||| || || || ||||||||||| || | ||| | Sbjct 148837 CCTTCTATAGAATCGTCCTGCATCGCAACAAGGAAGCAGCTAGACATCTGTGGTCGAGGA 148778 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT----TCAGAAAGTAG 63522 || || | ||| || | || ||||||||||| ||||| | ||| ||| |||| Sbjct 148777 GTGCCAGAATTGAAAAGAGTCGGAGAAGCGTGGGTAAAGTACTTTAAGCTCATGAAGT-- 148720 Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63581 |||| ||||||| ||| | ||| || ||| || | || || || || | ||||||| Sbjct 148719 --TGTAGGTCTCAAGAGCGGCGTCAATGTCCTCACCG-TGGATACCAACGGACACACGCA 148663 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 |||||||||||||||||||||||| |||| | ||||||| ||| || ||| || Sbjct 148662 TTAACATGTGCTGAGGTCTTTCAATCGTCTTTCCATCAATTTTCATCAAATATGATCGTT 148603 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTA 63669 | | ||| || ||||| || |||||||| Sbjct 148602 CGAGAGTCTTGAAACCGAAGTAGTTGTA 148575 Score = 118 bits (130), Expect = 1e-21 Identities = 192/274 (70%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG-ATCTCATCATTCCATAATTTTC 62156 ||||||||| ||| |||| || ||| | || | | |||||||||| ||| | || Sbjct 150823 CTGAATGGAACCATTATCTTGCACGATC-TGTTGTCGGATCTCATCATCCCAGTAATTGA 150765 Query 62157 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62216 | ||||||| | | ||| ||||| || ||||| ||||| ||||| || |||| || | Sbjct 150764 TTTCGGTTAGCTCACGAAGAAGATGTGGGTTAACAACTTGGAATTCGCCGGACAGAACAC 150705 Query 62217 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 62276 || ||||| || ||| | || | || || | ||||||||| ||||||||||| || | Sbjct 150704 GTCGCGTGTAGATGTTATTCGTGAAGGGCTCAATAGACTCATTGTTTCCCAAAATCTGGG 150645 Query 62277 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62336 |||| || || || ||||| || | |||| | | |||| | ||||| | | | | Sbjct 150644 CAGTGGAGGCTGTTGGCATCGGGGAAACCAGAAGAGAGTTTCGTACACCGTGTCTGGTAA 150585 Query 62337 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 ||| ||| | || ||||| | ||||||||| Sbjct 150584 CTTTCTCTCTGAGGCTGTCCCAGTCCCAAAGATC 150551 Score = 86.0 bits (94), Expect = 8e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||| || | ||| |||| || | |||| || || || || || ||||||||||| || Sbjct 151124 CTTATCGACTGTAAATTTGATAGCTGCGGCGGCCGGCTTTGTGCGAAGATAGTACATGCC 151065 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| | || | |||| || ||| |||||| ||| ||| | ||| |||| Sbjct 151064 AGTTTTCAATCCCATCTTCCAGCCAGTAAAGTGCATAGACGTGAGTGTTCCATACTTCGG 151005 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 | ||| | ||||||||| | ||| || || |||||||| | ||| | || ||||| Sbjct 151004 TTGTGCGACATGGATATTAAGAGACTGGGACTGGTCGATGAATGGTCCACGATCGGCAGC 150945 Query 62020 CATTTTTATAATCGTCTTT-TGTGGAATTTCCCAAATAGTT 62059 ||||| | || ||| ||| || |||||||||| |||| Sbjct 150944 CATTTGAAGAA-CGTTTTTCTGCTTGATTTCCCAAACAGTT 150905 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 63794 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 63853 |||||||| || ||||| | || |||||||||||||||||||| ||||| || || | Sbjct 148408 AAATCCTCGATGACTTCCGTGAAGAGTTTTTTTGTTTCTTTGTGAAGATTAGAAACAGAA 148349 Query 63854 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTG-GCTGCTATTTC 63912 || | ||| || || || ||||| || ||||| | | ||| || || || | || Sbjct 148348 ATACGAGCAGCAAGGATTGCATAGTCGGGATGAT-TAACCGACATCTGCGCAGCAGTCTC 148290 Query 63913 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 ||| || ||| |||| | || || ||||| || || | ||| || || | || |||| Sbjct 148289 GGCAGCAAGATTGTCAAGCTCGACGGTTGTAACGCCGTCATAAATGCCATCAATGACCTA 148230 Query 63973 CATAGCTATTTT 63984 | | |||||| Sbjct 148229 AAATGATATTTT 148218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622020296000