Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq594 87.8 2e-12 >seq594 Length=218677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 93419 TGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTAC 93477 ||||| ||||||||| | | ||||| | ||||| | ||| || | |||| || || Sbjct 188526 TGGAAGCCGTAGAAAGAGCGCGCTTCTGGAATCTGAATTTCG-GACATGAATCGATCGAC 188584 Query 93478 GAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAA 93537 |||||| || || || || || ||| ||| ||||| ||||| | | ||||| || || Sbjct 188585 GAGATTCTCGTTAACGATTCCGTCGCTTGCAGCAAAGAAAGCGAGCACGTGCTTAATGAA 188644 Query 93538 ATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTC 93597 | ||| || | || ||||| | ||| ||| | || | ||||||||||| Sbjct 188645 GAACTGCTCCTCCTTCTTGAGCTTCTTCCAGTCGTCCATGTCGCGTCCGAGATCGACTTC 188704 Query 93598 TTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 |||| ||||| || || || |||||||||||||||| ||| || ||| Sbjct 188705 TTCGGTCGTCCAGAAAGACGCCACTGCTTTTTTGTACATTCGCCAGATATCT 188756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556852029442400