Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq355 132 4e-26 seq654 131 1e-25 >seq355 Length=2689 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||||||||| || ||| |||| |||||||| ||| || | Sbjct 367 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 308 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||||| |||||||| || || |||||||| || || Sbjct 307 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 248 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| ||| | || ||| ||||| | || || |||||| Sbjct 247 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 188 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||| | || || || | ||| | || || ||| Sbjct 187 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGGT 140 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||||||||| || ||| |||| |||||||| ||| || | Sbjct 1051 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 992 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || ||||||||||| ||||||||||| || || Sbjct 991 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 932 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 931 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 872 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | ||| | || || ||| Sbjct 871 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGT 824 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| ||||| ||||||| || || || | | Sbjct 2143 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTCGAGGTCGAGGCTTCT 2084 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || |||||||| ||||| || || || || Sbjct 2083 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 2024 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||| || | || || |||||| Sbjct 2023 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 1964 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | ||| | || | ||| | || ||||| Sbjct 1963 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGG 1917 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||||||||| || ||| |||| |||||||| ||| || | Sbjct 595 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 536 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||||| |||||||| || || |||||||| || || Sbjct 535 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 476 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| ||| | || ||| ||||| | || || |||||| Sbjct 475 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 416 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | ||| | || || ||| Sbjct 415 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGT 368 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||||||||| || ||| |||| |||||||| ||| || | Sbjct 823 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 764 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||||| |||||||| || || |||||||| || || Sbjct 763 GACACTATCGACAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 704 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| ||| | || ||| ||||| | || || |||||| Sbjct 703 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 644 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | ||| | || || ||| Sbjct 643 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGT 596 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| || || || || || |||| || || || ||| || || Sbjct 1279 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 1220 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || |||||||| ||||||||||| || || Sbjct 1219 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 1160 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | || ||| |||||| | || || |||||| Sbjct 1159 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 1100 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | ||| | || || ||| Sbjct 1099 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGT 1052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 |||||||| || ||||| || ||||| || || || || ||||| ||||| ||| | || Sbjct 1414 GACAAGGAAGGAATTCCCCCAGATCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTTGAA 1355 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| || ||| |||||||||||||||| ||||| || || || | ||| | || ||| Sbjct 1354 GATGGTCGAACCCTCTCCGATTACAACATCCAAAAGGAGTCTACTTTGCATCTTGTGTTG 1295 Query 22432 CGATTGCGCGGAGGT 22446 || | || || ||| Sbjct 1294 CGTCTCCGAGGTGGT 1280 >seq654 Length=87504 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||||||||| || ||| |||| |||||||| ||| || | Sbjct 82003 ATGCAGATCTTCGTCAAGACTTTAACCGGCAAGACGATCACGCTTGAAGTTGAAGCCTCG 81944 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || ||||||||||| ||||||||||| || || Sbjct 81943 GACACTATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATTCCACCAGACCAG 81884 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | || ||| |||||| | ||||| |||||| Sbjct 81883 CAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCCGACTACAAC 81824 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| || || Sbjct 81823 ATCCAGAAAGAGTCGAC 81807 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| ||||| |||||||||| || || | | Sbjct 83095 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAAACCATCACTCTTGAGGTCGAGGCTTCT 83036 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || || |||||||| ||||| || || || || Sbjct 83035 GACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATCCCGCCAGACCAG 82976 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||| || | || || |||||| Sbjct 82975 CAGCGACTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGAACTCTTTCTGACTACAAC 82916 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | ||| | || | ||| | || ||||| Sbjct 82915 ATTCAAAAAGAGTCTACTCTCCATCTCGTCCTCCGACTTCGAGGAGG 82869 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||||||||| |||| || || || || | || Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||||| |||||||| || || |||||||| || || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| ||| | || ||| ||||| | || || |||||| Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| |||||| | || || || | ||| | || || ||| Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGTCCTTCGACTTCGTGGCGGT 81548 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| || || || || || |||| || || || ||| || || Sbjct 82231 ATGCAGATTTTCGTCAAAACCTTGACTGGCAAGACCATCACCCTCGAGGTCGAAGCCTCC 82172 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || |||||||| ||||||||||| || || Sbjct 82171 GACACTATCGAAAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 82112 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | || ||| |||||| | || || |||||| Sbjct 82111 CAGCGACTCATCTTCGCTGGCAAGCAGCTTGAAGATGGTCGCACCTTGTCAGACTACAAC 82052 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||| | || | ||| | || || ||| Sbjct 82051 ATCCAGAAAGAGTCGACGCTTCATCTCGTCCTCCGACTCCGTGGTGGT 82004 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22312 GACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAG 22371 |||||||| || ||||| || ||||| || || || || ||||| ||||| ||| | || Sbjct 82366 GACAAGGAAGGAATTCCCCCAGATCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTTGAA 82307 Query 22372 GATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||| || ||| |||||||||||||||| ||||| || || || | ||| | || ||| Sbjct 82306 GATGGTCGAACCCTCTCCGATTACAACATCCAAAAGGAGTCTACTTTGCATCTTGTGTTG 82247 Query 22432 CGATTGCGCGGAGGT 22446 || | || || ||| Sbjct 82246 CGTCTCCGAGGTGGT 82232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721554551900