Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq633 96.9 7e-15 seq569 96.9 7e-15 seq1034 91.5 3e-13 seq555 91.5 3e-13 seq540 91.5 3e-13 seq536 91.5 3e-13 seq616 87.8 4e-12 seq530 87.8 4e-12 seq606 86.0 1e-11 seq574 86.0 1e-11 seq546 86.0 1e-11 seq541 86.0 1e-11 seq532 86.0 1e-11 >seq633 Length=110237 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | |||||||||||| || Sbjct 51595 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGTCGTGGGTTCAAG 51654 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 51655 TCCCACATCGGGC 51667 >seq569 Length=348850 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | |||||||||||| || Sbjct 216705 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGTCGTGGGTTCAAG 216764 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 216765 TCCCACATCGGGC 216777 >seq1034 Length=17619 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | || ||||||||| || Sbjct 4668 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGCCGTGGGTTCAAG 4727 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 4728 TCCCACATCGGGC 4740 >seq555 Length=514895 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | || ||||||||| || Sbjct 424990 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGCCGTGGGTTCAAG 425049 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 425050 TCCCACATCGGGC 425062 >seq540 Length=1094060 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | || ||||||||| || Sbjct 415608 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGCCGTGGGTTCAAG 415667 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 415668 TCCCACATCGGGC 415680 >seq536 Length=1487711 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||||| | |||| |||||| | || ||||||||| || Sbjct 1102668 AGCCCGGTTAGCTCAGTCGGTAGAGCGTTGGACTTTTAATCCAACGGCCGTGGGTTCAAG 1102727 Query 142563 CCCCACATCGGGC 142575 |||||||||||| Sbjct 1102728 TCCCACATCGGGC 1102740 >seq616 Length=144272 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| |||||||||||||||||||||| | ||||||||||| | ||||| ||||||||| Sbjct 132457 AGCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAG 132516 Query 142563 CCCCACAT 142570 |||| ||| Sbjct 132517 CCCCGCAT 132524 >seq530 Length=3167015 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| |||||||||||||||||||||| | ||||||||||| | ||||| ||||||||| Sbjct 1564546 AGCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAG 1564487 Query 142563 CCCCACAT 142570 |||| ||| Sbjct 1564486 CCCCGCAT 1564479 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| |||||||||||||||||||||| | ||||||||||| | ||||| ||||||||| Sbjct 1681687 AGCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAG 1681628 Query 142563 CCCCACAT 142570 |||| ||| Sbjct 1681627 CCCCGCAT 1681620 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 505251 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 505192 Query 142564 CCCACAT 142570 ||| ||| Sbjct 505191 CCCGCAT 505185 >seq606 Length=172464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 67456 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 67515 Query 142564 CCCACAT 142570 ||| ||| Sbjct 67516 CCCGCAT 67522 >seq574 Length=306621 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 48369 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 48310 Query 142564 CCCACAT 142570 ||| ||| Sbjct 48309 CCCGCAT 48303 >seq546 Length=782618 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 374268 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 374209 Query 142564 CCCACAT 142570 ||| ||| Sbjct 374208 CCCGCAT 374202 >seq541 Length=1047822 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 893674 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 893615 Query 142564 CCCACAT 142570 ||| ||| Sbjct 893614 CCCGCAT 893608 >seq532 Length=2515153 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| |||||||||||||||||||||| | ||||||||||| | ||||| |||||||||| Sbjct 2265253 GCCTGGTTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGCGGGTTCGAGC 2265312 Query 142564 CCCACAT 142570 ||| ||| Sbjct 2265313 CCCGCAT 2265319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820206859660