Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq594 145 1e-29 >seq594 Length=218677 Score = 145 bits (160), Expect = 1e-29 Identities = 162/213 (76%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || || ||||| || || ||||||||||| |||||||||||||| || ||||| || Sbjct 188403 GGACTCTTCAACGCGATCGAGACGATGCCGGCTATCAAGAAGAAGGCTGATTGGGCACTG 188344 Query 42666 AACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 || ||||||| || |||| || | | | || || | | || || |||||||| Sbjct 188343 AAGTGGATCG---GTGCCGATGCGCCCTACTCCGTTAGAGTCATCGCTTTCGCCGCCGTC 188287 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTC 42784 || |||||||||||||| ||| |||| ||| ||||||||||||||||| ||| ||| || Sbjct 188286 GAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCATCTTCTGGCTCAAGAAGAGAGGCCTC 188227 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||| | |||||||| ||||| || || Sbjct 188226 -ATGCCCGGCGTAACCTTCTCCAACGAGCTTAT 188195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324326657600