Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq530 91.5 1e-13 >seq530 Length=3167015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 20243 GTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCC 20302 || |||||||||| ||| || | || | ||||| ||||| |||||||||||||| Sbjct 2104262 GTGACATGAGCAATCATTATTGTCATCAGCGCGTAGCTCGCAATATTAAAAGGAACTCCG 2104203 Query 20303 AAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAA 20362 | ||||||||| | | ||| || ||||||||||| |||| |||| || |||||| Sbjct 2104202 AGACCCATGTCACAACTGCGCTGGTAGAGCTGACAGGAGAGCTTTCCGTTTGCGACATAA 2104143 Query 20363 AATTGACA 20370 |||||||| Sbjct 2104142 AATTGACA 2104135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441365848378400