Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq355 167 6e-36 seq654 152 1e-31 >seq355 Length=2689 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || |||||||||| ||| ||||| ||||| || ||||| | Sbjct 369 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 428 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 429 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 488 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||| || |||||||| || |||| || | ||| ||| Sbjct 489 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 548 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| ||||| | |||||||||||| |||||||| Sbjct 549 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 167 bits (184), Expect = 6e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || |||||||||| ||| ||||| ||||| || ||||| | Sbjct 597 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGAA 656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 657 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 716 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || |||||||| || |||||||| || |||| || | ||| ||| Sbjct 717 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 776 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| ||||| | |||||||||||| |||||||| Sbjct 777 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || |||||||||| ||| ||||| ||||| || ||||||| Sbjct 825 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 884 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 885 AAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 944 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || |||||||| || |||| || | ||| ||| Sbjct 945 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 1004 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| ||||| | |||||||||||| |||||||| Sbjct 1005 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || |||||||||| ||| ||||| ||||| || ||||| | Sbjct 1053 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 1112 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 1113 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 1172 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||||||||| || |||||||| |||| ||| | ||| || Sbjct 1173 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 1232 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || |||| || |||||||| |||||||| Sbjct 1233 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || |||| ||| || | |||| ||| ||||| ||||| || ||||| Sbjct 138 TGACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCC 197 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || ||||| | || || || |||||||| || ||||| || | Sbjct 198 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 257 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || |||||||| || |||||||| || |||| || | ||| Sbjct 258 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCA 317 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| ||||| | |||||||||||| |||||||| Sbjct 318 ACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 105 bits (116), Expect = 2e-17 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| || |||||||| | || |||||||| || || |||| Sbjct 1913 CATG-CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGT 1971 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || || || | || || || || ||||| || ||||| || | Sbjct 1972 CAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGG---T 2028 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||| ||||| || |||||||| || ||||| || || || || | || | Sbjct 2029 CTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAG 2088 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || ||||| ||||||||||| || |||||||| Sbjct 2089 CCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 >seq654 Length=87504 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || |||||||||| ||| ||||| ||||| || ||||| | Sbjct 82005 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 82064 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 82065 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 82124 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||||||||| || |||||||| |||| ||| | ||| || Sbjct 82125 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 82184 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || |||| || |||||||| |||||||| Sbjct 82185 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| || ||||| |||| ||| ||||| ||||| || ||||||| Sbjct 81777 CCACCACGAAGTCGGAGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGAC 81836 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || || || |||||||| || ||||| || ||| Sbjct 81837 AAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 81896 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || |||||||| || |||| || | ||| ||| Sbjct 81897 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAACT 81956 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| ||||| | |||||||||||| |||||||| Sbjct 81957 TCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || |||| ||| || | |||| ||| ||||| ||||| || ||||| Sbjct 81546 TGACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCC 81605 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || ||||| | || || || |||||||| || ||||| || | Sbjct 81606 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 81665 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||| || |||||||| || ||||||||||| || | ||| | || Sbjct 81666 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCA 81725 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || ||||| || || |||||||| |||||||| Sbjct 81726 ACCTCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 102 bits (112), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| || |||||||| | || |||||||| || || |||| Sbjct 82865 CATG-CCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGT 82923 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || || || | || || || || ||||| || ||||| || | Sbjct 82924 CAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGG---T 82980 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||| ||||| || |||||||| || ||||| || || || || | || | Sbjct 82981 CTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAG 83040 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || ||||| ||||||||||| || |||||||| Sbjct 83041 CCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||||| ||| |||||||| | ||| ||||||||||| || || | Sbjct 83093 CATG-CCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAAT 83151 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || |||||||| | || || || |||||||| || ||||| || | Sbjct 83152 CAGAAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTG---GT 83208 Query 288362 CTGGG---ATTCCTTCTTTATCCT 288382 ||||| |||||||| || |||| Sbjct 83209 CTGGGGGAATTCCTTCCTTGTCCT 83232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179635355954280