Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq563 89.7 6e-13 seq594 86.0 7e-12 seq693 82.4 9e-11 >seq563 Length=403863 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 113699 TGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG 113758 ||||| || |||||||| |||||||||| || ||||| | || || | ||| |||| Sbjct 150979 TGGGACTGGTCGATGAATGGTCCACGATCGGCAGCCATTTGAAGAACGTTTTTCTGCTTG 150920 Query 113759 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCA 113807 |||||||| ||||||||||| | | || || ||| |||||||||||| Sbjct 150919 ATTTCCCAAACAGTTCTGTACCGTTCTTTGATGTCAGCTGGGATATCCA 150871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 115156 AAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGC 115215 |||||||||||| ||||| ||||| | || || |||| ||||| || || || | || Sbjct 148808 AAGGAAGCAGCTAGACATCTGTGGTCGAGGAGTGCCAGAATTGAAAAGAGTCGGAGAAGC 148749 Query 115216 GTGGATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGA-CGGCGGGAATGTCT 115273 |||| | || ||| || | ||| | |||||||| ||||| ||||| |||||| Sbjct 148748 GTGGGT-AAAGTACTTTAAGCTCATGAAGTTGTAGGTCT-CAAGAGCGGCGTCAATGTCC 148691 Query 115274 TCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATC 115327 || ||||| ||||| | || || ||||| ||||||| || ||| |||| ||| Sbjct 148690 TCACCGTGGATACCAACGGACACACGCATTAACATGTGCTGAGGTCTTTCAATC 148637 >seq594 Length=218677 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 ||| ||||| | || || || || || |||||| | || |||||||| || | ||| Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 ||| | |||||| || || ||| || || ||||||||||| || || || ||||| Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 126184 CGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTG 126243 || | ||| || | | || || ||| | | | | |||||||| ||||| | Sbjct 188299 AGCGA--TGACTCT-AACGGAGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAATC 188355 Query 126244 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 126301 ||||| |||| |||| ||| | |||| |||||| | |||||| || |||| ||| Sbjct 188356 AGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTTCTCT 188413 >seq693 Length=61257 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 30760 AATAATGTATATGGCCCAAATCAATATCCAGAAAAACTCATTCCAAAGTTTATACGACTA 30819 ||||| || ||||| ||||||||||||||||||||| | |||||||| ||||| | || | Sbjct 40140 AATAACGTTTATGGACCAAATCAATATCCAGAAAAAGTTATTCCAAAATTTATTCAACAA 40081 Query 30820 CTGAAAAATAATGAGAAATGTACAATTCATGGC 30852 | |||||| || ||| |||||||| ||| Sbjct 40080 TTAAAAAATGGAGAAAAAGTAACAATTCAAGGC 40048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344191680800