Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq355 116 4e-21 seq654 113 5e-20 seq532 89.7 6e-13 seq530 84.2 2e-11 seq547 82.4 8e-11 >seq355 Length=2689 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| ||||| |||| ||||| || | || || |||||||| || || || Sbjct 1952 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 2011 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | || | | ||||||||| ||| || ||||| | Sbjct 2012 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 2071 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || |||| |||||||||||||| || || ||||| || Sbjct 2072 CTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 2131 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 2132 AAAGATCTGCAT 2143 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||| || || || ||||| || | ||||| ||| | || || Sbjct 159 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 218 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || |||||||||||||| | ||| | || || ||||| | Sbjct 219 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 278 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||||| || | ||| | | | ||||| | ||| || || | |||||| || || Sbjct 279 ATTTTGGCCTTCA-CGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTT 337 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||| ||||| || ||||| ||||| Sbjct 338 GCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | || || || | || || |||||||| |||||||| Sbjct 1088 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 1147 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | ||| | | ||||||||| |||||| |||| | Sbjct 1148 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 1207 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| | ||| || |||| |||||||| ||||| || | || || || Sbjct 1208 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 1267 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 1268 GAAAATCTGCAT 1279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | ||||| ||| | || || |||||||| || ||||| Sbjct 404 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 463 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | ||| | || || ||||| |||||| || | ||| Sbjct 464 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGT 522 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| | ||| || || | |||||| || ||||| |||| ||||| | Sbjct 523 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 582 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 583 CGAAGATCTGCAT 595 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | ||||| ||| | || || |||||||| || ||||| Sbjct 632 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 691 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | ||| | || || ||||| |||||| || | ||| Sbjct 692 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGT 750 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| | ||| || || | |||||| || ||||| |||| ||||| | Sbjct 751 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 810 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 811 CGAAGATCTGCAT 823 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||||||| | |||||| || ||||||||| || |||||||| | Sbjct 1280 ACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGA 1339 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || |||||||||||||| || | || Sbjct 1340 GAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGG 1399 Query 42101 CACGCTCTCCTTGTCC 42116 | | ||||||||| Sbjct 1400 AATTCCTTCCTTGTCC 1415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 860 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 919 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | ||| | | |||||||| ||| || || | ||| Sbjct 920 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 978 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| | ||| || || | |||||| || ||||| |||| ||||| | Sbjct 979 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 1038 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 1039 CGAAGATCTGCAT 1051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || |||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 2180 CTCTTTCTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAA 2239 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || |||||||||||||| | || | | ||||||||| Sbjct 2240 GATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 2279 >seq654 Length=87504 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| ||||| |||| ||||| || | || || |||||||| || || || Sbjct 82904 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAA 82963 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | || | | ||||||||| ||| || ||||| | Sbjct 82964 GATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATT 83023 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || || | |||||||||||||| || || ||||| || Sbjct 83024 CTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGAC 83083 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 83084 AAAGATCTGCAT 83095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | || || || | || || |||||||| |||||||| Sbjct 82040 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 82099 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | ||| | | ||||||||| |||||| |||| | Sbjct 82100 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 82159 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| | ||| || |||| |||||||| ||||| || | || || || Sbjct 82160 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 82219 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 82220 GAAAATCTGCAT 82231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||||||| | |||||| || ||||||||| || |||||||| | Sbjct 82232 ACCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGA 82291 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || |||||||||||||| || | || Sbjct 82292 GAGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGG 82351 Query 42101 CACGCTCTCCTTGTCC 42116 | | ||||||||| Sbjct 82352 AATTCCTTCCTTGTCC 82367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||| || || || ||||| || | ||||| ||| | || || Sbjct 81567 ACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCA 81626 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || ||||| || |||||||||||||| | ||| | || || ||||| | Sbjct 81627 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGG 81686 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| || | | | | |||||| | || || |||| ||||| ||||| Sbjct 81687 ATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTA 81746 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || || ||||| ||||| Sbjct 81747 CCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| || |||||||||| ||||| || |||| || |||||||| |||||||| Sbjct 83132 CTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAA 83191 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 || |||||||||||||| | || | | ||||||||| Sbjct 83192 GATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 83231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 81812 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 81871 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | ||| | | |||||||| ||| || || | ||| Sbjct 81872 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 81930 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| | ||| || || | |||||| || ||||| |||| ||||| | Sbjct 81931 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 81990 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 81991 CGAAGATCTGCAT 82003 >seq532 Length=2515153 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | ||| |||||| || || ||||| || | ||||| || | || || Sbjct 2299452 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCG 2299511 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 ||||||||||||||||| ||||||||||||||||| | || | | ||||||||| Sbjct 2299512 AGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 2299568 >seq530 Length=3167015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| |||||| | | | |||||||||| |||| |||||||||||||||| || Sbjct 255034 TGAAAAAAGTTCTCCGAGTCGGGGAATCGAACCCCGGTCGCCCGCGTGACAGGCGGGAAT 254975 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 |||||||||||||||| | |||| Sbjct 254974 ACTCACCACTATACTAACACGGAT 254951 >seq547 Length=691497 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| | |||| | | | |||||||||| |||| |||||||||||||||| | Sbjct 192996 ATGAAAAAGAT-CTCCGTGTCGGGGAATCGAACCCCGGTCGCCCGCGTGACAGGCGGGAA 193054 Query 57055 TACTCACCACTATACTACCGAGGATTG 57081 ||||||||||||||||| | |||||| Sbjct 193055 TACTCACCACTATACTAACACGGATTG 193081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543204244398400