Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq654 150 2e-31 seq355 150 2e-31 >seq654 Length=87504 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| |||||| ||||| || |||||||| |||| Sbjct 82004 ACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGA 82063 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||||||||||||||| || | ||||| ||||||||||| || || Sbjct 82064 CAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGG 82123 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| ||| || || | || || ||| || || Sbjct 82124 AATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGAC 82183 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| ||||| |||||||| ||||| Sbjct 82184 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || || |||| |||||| ||||| || |||||||| || | Sbjct 81776 ACCACCACGAAGTCGGAGGACGAGGTGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGA 81835 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | ||||| ||||||||||| || || Sbjct 81836 CAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGG 81895 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| || || | || || ||| || || Sbjct 81896 AATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAAC 81955 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| ||||| || ||||| || ||||| Sbjct 81956 TTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 82003 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||||||||||||||| || | | || || | || Sbjct 82884 AGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCC 82943 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | ||||| ||||||||||| || || || ||||| || || Sbjct 82944 TCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCC 83003 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || ||| || || || || | ||| | ||| Sbjct 83004 TGGA-TCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGT 83062 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || || || ||||| Sbjct 83063 TTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || ||| || | |||| || || ||||| || |||||||| || | Sbjct 81548 ACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 81607 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | || || ||||||||||| || || Sbjct 81608 AAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGG 81667 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| || || | || || || || || Sbjct 81668 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAAC 81727 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | || || ||||| | ||||| ||||| || ||||| Sbjct 81728 CTCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || ||| || ||||| | |||||| |||||||| ||||||||||| | Sbjct 83097 CCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAGAA 83156 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| ||||||||||| || | || || ||||||||||| || ||| Sbjct 83157 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 83216 Query 64337 ATTCCTTCTTTTTC 64350 |||||||| || || Sbjct 83217 ATTCCTTCCTTGTC 83230 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || || ||||| ||||||||||| | || ||| || | ||||| Sbjct 82250 CACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGGGTTCGACCATCTTC 82309 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| ||| | ||||| |||||||| || || ||||||||||| || || Sbjct 82310 AAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTC 82366 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||| |||||||| || | || || ||| |||| Sbjct 82546 AAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTC 82605 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | || || ||||||||||| || || || |||||||| || Sbjct 82606 CTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTC 82665 Query 64351 TTG 64353 || Sbjct 82666 CTG 82668 >seq355 Length=2689 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| |||||| ||||| || |||||||| || | Sbjct 368 ACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGA 427 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | || || ||||||||||| || || Sbjct 428 AAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGG 487 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| || || | || || ||| || || Sbjct 488 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAAC 547 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| ||||| || ||||| || ||||| Sbjct 548 TTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| |||||| ||||| || |||||||| || | Sbjct 596 ACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCCGA 655 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | || || ||||||||||| || || Sbjct 656 AAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGG 715 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| || || | || || ||| || || Sbjct 716 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAAC 775 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| ||||| || ||||| || ||||| Sbjct 776 TTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| |||||| ||||| || |||||||| |||| Sbjct 1052 ACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGA 1111 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||||||||||||||| || | ||||| ||||||||||| || || Sbjct 1112 CAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGG 1171 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || ||||| ||| || || | || || ||| || || Sbjct 1172 AATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGAC 1231 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| ||||| ||||| |||||||| ||||| Sbjct 1232 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || ||||||| |||||| ||||| || |||||||| || | Sbjct 824 ACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGA 883 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | ||||| ||||||||||| || || Sbjct 884 CAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAAGATGAGTCGCTGCTGGTCTGGTGG 943 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| || || | || || ||| || || Sbjct 944 AATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAAC 1003 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| ||||| || ||||| || ||||| Sbjct 1004 TTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 1051 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | || ||| || | |||| || || ||||| || |||||||| || | Sbjct 140 ACCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGA 199 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | |||||||||||||||||||| | || || ||||||||||| || || Sbjct 200 AAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGG 259 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| ||| || || | || || ||| || || Sbjct 260 AATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTGTCGATAGTGTCCGAGGCTTCAAC 319 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||||||||| ||||| || ||||| || ||||| Sbjct 320 TTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 367 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||||||||||||||| || | | || || | || Sbjct 1932 AGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCC 1991 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||||||| | ||||| ||||||||||| || || || ||||| || || Sbjct 1992 TCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCC 2051 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| ||| | || ||| || || || || | ||| | ||| Sbjct 2052 TGGA-TCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGT 2110 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | ||| || || || || ||||| Sbjct 2111 TTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || || ||||| ||||||||||| | || ||| || | ||||| Sbjct 1298 CACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGGGTTCGACCATCTTC 1357 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| ||| | ||||| |||||||| || || ||||||||||| || || Sbjct 1358 AAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTC 1414 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || ||| || ||||| | |||||| ||||| || ||||||||||| | Sbjct 2145 CCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAGAA 2204 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| ||||||||||| || | || || ||||||||||| || ||| Sbjct 2205 AGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 2264 Query 64337 ATTCCTTCTTTTTC 64350 |||||||| || || Sbjct 2265 ATTCCTTCCTTGTC 2278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || ||||| |||||||| || | || || ||| |||| Sbjct 1594 AAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTC 1653 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | || || ||||||||||| || || || |||||||| || Sbjct 1654 CTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTC 1713 Query 64351 TTG 64353 || Sbjct 1714 CTG 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636930594400