Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq355 109 5e-19 seq654 104 2e-17 >seq355 Length=2689 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||||||||||||||| | ||| || ||||| || || || |||| | Sbjct 1950 GACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCA 2009 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || |||||||| ||||| ||| || ||| | Sbjct 2010 AAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACA 2069 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||||| || | ||||| || || ||||| || Sbjct 2070 TTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTG 2129 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 2130 ACAAAGATCTGCATG 2144 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | ||| | | ||||||||||| |||||||||||| Sbjct 1580 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1639 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| || || || | |||| || ||||| ||||| || || Sbjct 1640 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 1699 Query 138508 ATACCTTCTTTGTC 138521 |||||||||||||| Sbjct 1700 ATACCTTCTTTGTC 1713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || || || || || || || || | Sbjct 1086 GACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCG 1145 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || |||||||| ||||| |||||| || | Sbjct 1146 AAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACG 1205 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | || ||||||| || | || || ||||||| ||||| Sbjct 1206 TTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTG 1265 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 1266 ACGAAAATCTGCAT 1279 >seq654 Length=87504 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | || || || | | | ||||| || || ||||||||||| Sbjct 81549 CCGCCACGAAGTCGAAGGACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAA 81608 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| || || || || || |||| |||| || ||||| ||||| || || Sbjct 81609 AGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 81668 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| || | | ||| | |||||||| | ||| ||| Sbjct 81669 ATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACC 81728 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || || ||||| || || |||||||| Sbjct 81729 TCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||||||||||||||| | ||| || ||||| || || || |||| | Sbjct 82902 GACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCA 82961 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || |||||||| ||||| ||| || ||| | Sbjct 82962 AAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACA 83021 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | ||||| || || ||||| || Sbjct 83022 TTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTG 83081 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 83082 ACAAAGATCTGCATG 83096 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | ||| | | ||||||||||| |||||||||||| Sbjct 82532 CCACCTCGAAGACGAAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAG 82591 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| || || || | |||| || ||||| ||||| || || Sbjct 82592 AGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGCGGG 82651 Query 138508 ATACCTTCTTTGTC 138521 |||||||||||||| Sbjct 82652 ATACCTTCTTTGTC 82665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || || || || || || || || | Sbjct 82038 GACTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCG 82097 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || |||||||| ||||| |||||| || | Sbjct 82098 AAGATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACG 82157 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| | || ||||||| || | || || ||||||| ||||| Sbjct 82158 TTTTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTG 82217 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 82218 ACGAAAATCTGCAT 82231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254583867200