Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq654 95.1 9e-15 seq355 95.1 9e-15 >seq654 Length=87504 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | |||||| || || ||||| || |||||||| || || Sbjct 82005 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTC--TG 82062 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | || ||||||||| | || | ||||| ||||| || Sbjct 82063 ACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTG 82122 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||||| || || |||| ||||| ||| ||| | Sbjct 82123 GAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGA 82182 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || |||| ||||| || ||||| |||||| Sbjct 82183 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCATA 82232 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | ||| | ||| || || || |||||||| ||||||||||| Sbjct 83095 TGCCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTTTGGATGTTGTAATCAG 83154 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| ||||||| | || ||||||||| | || | ||||| ||||| | Sbjct 83155 AAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGG 83214 Query 15068 GAATTCCTTCCTTGTC 15083 |||||||||||||||| Sbjct 83215 GAATTCCTTCCTTGTC 83230 >seq355 Length=2689 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | |||||| || || ||||| || |||||||| || || Sbjct 1053 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTC--TG 1110 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | || ||||||||| | || | ||||| ||||| || Sbjct 1111 ACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTG 1170 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||||| || || |||| ||||| ||| ||| | Sbjct 1171 GAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGA 1230 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || |||| ||||| || ||||| |||||| Sbjct 1231 CCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCATA 1280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | ||| | ||| || || || ||||| || ||||||||||| Sbjct 2143 TGCCACCACGGAGTCGAAGAACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAATCAG 2202 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| ||||||| | || ||||||||| | || | ||||| ||||| | Sbjct 2203 AAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGG 2262 Query 15068 GAATTCCTTCCTTGTC 15083 |||||||||||||||| Sbjct 2263 GAATTCCTTCCTTGTC 2278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357386511799100