Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq654 134 1e-26 seq355 134 1e-26 seq594 86.0 6e-12 >seq654 Length=87504 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | ||| |||||||| || || ||||| || | Sbjct 82005 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 82064 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||| | ||||||||| || || || Sbjct 82065 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 82124 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||||||| ||||| | ||||| ||||| | ||||| Sbjct 82125 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 82184 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| ||||| || ||||||||||| Sbjct 82185 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 82231 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||||||||| ||||| || | || || ||| || ||||| || || Sbjct 82899 GTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCG 82958 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || || || ||||||||| ||| || ||| Sbjct 82959 GCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTG 83018 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | |||||| || | || | ||||||||||| ||||| Sbjct 83019 ACATTCTCGATGGTGTCAGAAGCCTCGACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTC 83078 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 83079 TTGACAAAGATCTGCATG 83096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | |||||||| ||||| || ||||||||| Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || ||||| |||| | |||||||||||| || || Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 127007 ATGCCCTCCTTGTCC 127021 || || ||||||||| Sbjct 82353 ATTCCTTCCTTGTCC 82367 >seq355 Length=2689 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | ||| |||||||| || || ||||| || | Sbjct 1053 CCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCTGAC 1112 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || |||||| |||| | ||||||||| || || || Sbjct 1113 AAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCTGGTGGA 1172 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||||||| ||||| | ||||| ||||| | ||||| Sbjct 1173 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTTTCGATAGTGTCGGAGGCTTCGACC 1232 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| ||||| || ||||||||||| Sbjct 1233 TCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGACGAAAATCTGCAT 1279 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||||||||| ||||| || | || || ||| || ||||| || || Sbjct 1947 GTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCG 2006 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || || || ||||||||| ||| || ||| Sbjct 2007 GCAAAGATGAGTCGCTGCTGGTCTGGCGGGATACCTTCCTTGTCCTGGATCTTGGCTTTG 2066 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | |||||| |||| || | ||||||||||| ||||| Sbjct 2067 ACATTCTCGATGGTGTCAGAAGCCTCGACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTC 2126 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 2127 TTGACAAAGATCTGCATG 2144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | ||| | |||||||| ||||| || ||||||||| Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || ||||| |||| | |||||||||||| || || Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 127007 ATGCCCTCCTTGTCC 127021 || || ||||||||| Sbjct 1401 ATTCCTTCCTTGTCC 1415 >seq594 Length=218677 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 47145 ATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTAC 47204 |||||||||||| |||||| ||| |||||||||| ||| |||||| || || || | Sbjct 188304 ATCGCTTTCGCCGCCGTCGAAGGCATCTTCTTCTCCGGCTCCTTTGCCGCCATCTTCTGG 188245 Query 47205 ATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGAC 47264 | || | | ||| | ||||||||| | || || ||||||||| || || |||||| Sbjct 188244 CTCAAGAAGAGAGGCCTCATGCCCGGCGTAACCTTCTCCAACGAGCTTATTTCTAGAGAC 188185 Query 47265 GAAGG 47269 ||||| Sbjct 188184 GAAGG 188180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475493310862400