Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq654 96.9 3e-15 seq355 95.1 1e-14 >seq654 Length=87504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | ||| |||||||| || |||||||||||||| ||||| ||| Sbjct 81630 TGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATT 81689 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | ||| | ||||||||||| ||| || ||||| || | ||||| ||| Sbjct 81690 TTGGCCTTCACGTTTTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTACCG 81749 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || || || ||||| Sbjct 81750 GTAAGGGTTTTGACGAAGATCTGCAT 81775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||| || || || || ||||| || || || || Sbjct 82866 ATGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCA 82925 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | || | ||| |||||||| ||| Sbjct 82926 GAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGC 82985 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || ||||| || | |||||| |||| |||| Sbjct 82986 GGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCG 83045 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||||||||| ||||| || ||||| || ||||| Sbjct 83046 ACCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 >seq355 Length=2689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || ||||| || || || || ||||| || || || || Sbjct 1914 ATGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCA 1973 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | || | ||| |||||||| ||| Sbjct 1974 GAAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGC 2033 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || ||||| || | |||||| |||| |||| Sbjct 2034 GGGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCG 2093 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | ||||||||||| ||||| || ||||| || ||||| Sbjct 2094 ACCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| ||||| || || || ||||| || || || Sbjct 366 ATACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCC 425 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | || | ||| |||||||| || Sbjct 426 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 485 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| ||||| ||||| || | || | || | ||||| || | || Sbjct 486 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCGATAGTGTCCGAGGCTTC 544 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||| |||||||||| ||| || || || || ||||| Sbjct 545 AACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 595 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| ||||| || || || ||||| || || || Sbjct 594 ATACCACCACGGAGTCGGAGGACGAGATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCC 653 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | || | ||| |||||||| || Sbjct 654 GAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGT 713 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||||||||| ||||| ||||| || | || | || | ||||| || | || Sbjct 714 GGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGTTGTCGATAGTGTCCGAGGCTTC 772 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||| |||||||||| ||| || || || || ||||| Sbjct 773 AACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGACGAAGATCTGCAT 823 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | ||| |||||||| || |||||||||||||| ||||| ||| Sbjct 222 TGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATT 281 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || | || | || | ||||| || | || ||||| || || | ||| ||||| Sbjct 282 TTGGCCTTCA-CGTTGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCC 340 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||| || || || || ||||| Sbjct 341 GGTTAAAGTCTTGACGAAGATCTGCAT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996080949600