Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq594 84.2 3e-11 seq563 84.2 3e-11 >seq594 Length=218677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/240 (68%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596 ||| ||||| | || || || || || |||||| | || |||||||| || | ||| Sbjct 188179 ACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTCTCTT 188238 Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656 ||| | |||||| || || ||| ||||| ||||||||||| || || || ||||| Sbjct 188239 CTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGGCGAA 188298 Query 127657 CGCAAATAGACGCT--CGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCAC 127714 || | ||| || ||| || || | | | | | | | |||||||| ||||| Sbjct 188299 AGCGA--TGACTCTAACGG---AGTAGGGCGCATCGGCACCGATCCACTTCAGTGCCCAA 188353 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 127774 | ||||| |||| |||| || | |||| |||||| | |||||| || |||| ||| Sbjct 188354 TCAGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTTCTCT 188413 >seq563 Length=403863 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 ||||| || |||||||| |||| ||||| || ||||| | || || | ||| |||| Sbjct 150979 TGGGACTGGTCGATGAATGGTCCACGATCGGCAGCCATTTGAAGAACGTTTTTCTGCTTG 150920 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCA 115768 |||||||| ||||||||||| | | || || ||| |||||||||||| Sbjct 150919 ATTTCCCAAACAGTTCTGTACCGTTCTTTGATGTCAGCTGGGATATCCA 150871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497537261600