Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq594 86.0 1e-11 >seq594 Length=218677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 205/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Plus Query 159940 CAGTCCCT-CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 |||| ||| |||| | ||| || | ||||||||| | | | | ||| ||||||| || | Sbjct 188175 CAGTACCTTCGTCTCTAGAAATAAGCTCGTTGGAGAAGGTTACGCCGGGCATGAGGCCTC 188234 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 | |||||||| || ||||| ||||| | ||| || ||||| || || ||||| | Sbjct 188235 TCTTCTTGAGCCAGAAGATGGCGGCAAAGGAGCCGGAGAAGAAGATGCCTTCGACGGCGG 188294 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCG--TTGGTGTCATGGGTCCACCTTTTGGC 160116 | || || | || |||| || | |||| | || || | ||||| | || Sbjct 188295 CGAAAGCGATGA--CTCTAACGGAGTAGGGCGCATCGG---CACCGATCCACTTCAGTGC 188349 Query 160117 CCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 ||| ||||||||||| ||| |||||| ||||| ||||| || | || || Sbjct 188350 CCAATCAGCCTTCTTCTTGATAGCCGGCATCGTCTCGATCGCGTTGAAGAGTCCCATCTT 188409 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| ||| || | || |||| | | |||||||| | |||||| || | ||| | || Sbjct 188410 CTCTTTCGTGTCGTGGACCAGATTCTCGATCAGCTTGGCGTACATCTCCGAGTGGATGTT 188469 Query 160237 TTCGAT 160242 ||| || Sbjct 188470 TTCCAT 188475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142676305600