Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq654 116 4e-21 seq355 116 4e-21 seq532 82.4 9e-11 >seq654 Length=87504 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | || | || ||||| | ||| ||| ||||| || |||||||| | Sbjct 82867 TGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAG 82926 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || |||||||||||||| || || | ||||||||||| | || Sbjct 82927 AAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCG 82986 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| |||| || | | ||||| | || | Sbjct 82987 GGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA 83046 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||||| || || || || |||||||| ||||| Sbjct 83047 CCTCAAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 83095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||||||| | || || ||||||||||||||||| Sbjct 81584 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 81643 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || || ||||| ||| || ||| | | Sbjct 81644 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCACGTT 81703 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | || || || | ||||| ||||| || || || ||||| || Sbjct 81704 TTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATTGTTTTACCGGTAAGGGTTTTGAC 81763 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 81764 GAAGATCTGCAT 81775 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || | ||||| | || || ||||||||||| ||||| Sbjct 82040 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 82099 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||| ||| ||||| | Sbjct 82100 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 82159 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | ||| || || | |||||||| ||||| |||| ||||| || Sbjct 82160 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 82219 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 82220 GAAAATCTGCAT 82231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||||||| |||||||| ||| |||||||||||| ||||| ||||| Sbjct 82233 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 82292 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || || | |||||||| || | || Sbjct 82293 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 82352 Query 46487 ACGCTCTCCTTGTCC 46501 | | ||||||||| Sbjct 82353 ATTCCTTCCTTGTCC 82367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || || ||| |||| |||||||||||||| ||||| Sbjct 82567 CTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAA 82626 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | ||| | | || |||||| Sbjct 82627 GATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 82666 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| | ||||| | || || ||||||||||||||||| Sbjct 81812 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 81871 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||| |||||| ||| | ||| Sbjct 81872 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 81930 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | ||| || || | |||||| || ||||| || | || || | Sbjct 81931 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 81990 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 81991 CGAAGATCTGCAT 82003 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||| ||||| || || ||||| || |||| |||||||||||||| ||||| Sbjct 83132 CTCTTTTTGGATGTTGTAATCAGAAAGAGTTCGGCCGTCTTCGAGCTGCTTGCCAGCGAA 83191 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | || | | ||||||||| Sbjct 83192 GATAAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 83231 >seq355 Length=2689 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||| | || | || ||||| | ||| ||| ||||| || |||||||| | Sbjct 1915 TGCCTCCTCGAAGTCGGAGGACGAGATGGAGAGTAGACTCTTTTTGAATGTTGTAGTCAG 1974 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || |||||||||||||| || || | ||||||||||| | || Sbjct 1975 AAAGAGTTCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCTGGCG 2034 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| |||| || | | ||||| | || | Sbjct 2035 GGATACCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCAGAAGCCTCGA 2094 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||||||||| || || || || |||||||| ||||| Sbjct 2095 CCTCGAGAGTGATGGTTTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 2143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||||||| | || || ||||||||||||||||| Sbjct 176 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 235 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || || ||||| ||| || ||| | ||| Sbjct 236 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGT 294 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | ||| || || | |||||| || ||||| || | || || | Sbjct 295 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 354 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 355 CGAAGATCTGCAT 367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||||||| | || || ||||||||||||||||| Sbjct 404 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 463 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || || ||||| ||| || ||| | ||| Sbjct 464 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGT 522 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | ||| || || | |||||| || ||||| || | || || | Sbjct 523 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 582 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 583 CGAAGATCTGCAT 595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||||||| | || || ||||||||||||||||| Sbjct 632 CTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGCCCATCTTCAAGCTGCTTGCCGGCGAA 691 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || || ||||| ||| || ||| | ||| Sbjct 692 GATAAGTCGCTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATTTTGGCCTTCA-CGT 750 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | ||| || || | |||||| || ||||| || | || || | Sbjct 751 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 810 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 811 CGAAGATCTGCAT 823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || | ||||| | || || ||||||||||| ||||| Sbjct 1088 CTCTTTCTGGATGTTGTAGTCTGACAAGGTGCGACCATCTTCAAGCTGCTTGCCAGCGAA 1147 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| ||| ||| ||||| | Sbjct 1148 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTT 1207 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | ||| || || | |||||||| ||||| |||| ||||| || Sbjct 1208 TTCGATAGTGTCGGAGGCTTCGACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTTTTGAC 1267 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 1268 GAAAATCTGCAT 1279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||||||||| |||||||| ||| |||||||||||| ||||| ||||| Sbjct 1281 CCACCTCGGAGACGCAACACAAGATGCAAAGTAGACTCCTTTTGGATGTTGTAATCGGAG 1340 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || || | |||||||| || | || Sbjct 1341 AGGGTTCGACCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGATCTGGGGGA 1400 Query 46487 ACGCTCTCCTTGTCC 46501 | | ||||||||| Sbjct 1401 ATTCCTTCCTTGTCC 1415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || || ||| |||| |||||||||||||| ||||| Sbjct 1615 CTCCTTTTGGATGTTGTAGTCGGAGAGCGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAA 1674 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | ||| | | || |||||| Sbjct 1675 GATAAGTCGCTGCTGGTCTGGCGGGATACCTTCTTTGTCC 1714 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||||||||| | ||||| | || || ||||||||||||||||| Sbjct 860 CTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCAAGCTGCTTGCCGGCGAA 919 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||| |||||| ||| | ||| Sbjct 920 GATGAGTCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCCTTCA-CGT 978 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | ||| || || | |||||| || ||||| || | || || | Sbjct 979 TGTCGATAGTGTCCGAGGCTTCAACTTCAAGCGTGATCGTCTTGCCGGTTAAAGTCTTGA 1038 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 1039 CGAAGATCTGCAT 1051 >seq532 Length=2515153 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || ||||||||||| || ||||| Sbjct 2299469 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAA 2299528 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | || | | ||||||||| Sbjct 2299529 GATGAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 2299568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565229497495200