Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq539 145 3e-29 seq1064 107 8e-18 seq1077 104 9e-17 seq1162 96.9 1e-14 seq1020 95.1 5e-14 seq654 93.3 2e-13 seq1228 89.7 2e-12 seq1041 86.0 2e-11 >seq539 Length=1154401 Score = 145 bits (160), Expect = 3e-29 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || ||| ||||||| | ||||| ||| || ||||| ||| || || | Sbjct 1069373 TTCGCGCCAGAACAAATTTCTGCAATGGTCCTTCAAAAGATGAAGCAAATCGCCGAGGAG 1069432 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| ||||| | || | ||||| ||||||| || || |||||||| |||| Sbjct 1069433 TATCTTGGTCAAACGGTCAAAAGGGCAGTCGTTACTGTACCGGCGTATTTCAACGATGAG 1069492 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || ||||| |||||||||||||| ||||||||| | | || |||| ||||| Sbjct 1069493 CAGCGCCAAGCTACTAAAGATGCAGGCACGATTGCTGGTATTGAAGTGATTCGGATTATC 1069552 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || || || || |||||||| || || |||||||| | ||||| | || Sbjct 1069553 AACGAGCCAACTGCAGCTGCACTTGCGTATGGACTCGACAAATC------TGGCGTCGAG 1069606 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 |||||| | | || || ||| |||| || |||||| || ||| |||| | || Sbjct 1069607 AAAAATGTCCTTGTCTTCGATCTTGGCGGTGGAACTTTCGACGTATCTCTACTGACTATC 1069666 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || | || || |||||||| || || ||||||||||||||||| || || |||||| Sbjct 1069667 GACCAAGGTGTTTTTGAAGTGCTCGCTACAAATGGTGATACTCATCTTGGCGGGGAAGAT 1069726 Query 451598 ATTGA 451602 |||| Sbjct 1069727 TTTGA 1069731 Score = 129 bits (142), Expect = 2e-24 Identities = 247/362 (68%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| |||||||| || ||||| |||| || ||||| ||| || ||| | || Sbjct 1067594 CTCCAGAAGAAATCTCCGCTATGATTCTCGGAAAGATGAAGAAAATTGCCGAAGACTACC 1067535 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || |||| || ||| | || || | ||||| ||||| || ||| |||||| || | Sbjct 1067534 TCGGAACTCCCGTCACTCACGCCGTCGTCACTGTCCCCGCCTACTTCTCTGATGCCCAGC 1067475 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || || || || || || || || ||||| | | || | ||||| || || | Sbjct 1067474 GACAGGCCACCAAGGACGCCGGTGTCATCTCTGGTATGACCGTCATGCGAATCATCAACG 1067415 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 | ||||| || || ||| | || || || | ||| || | ||| || | ||||| | Sbjct 1067414 AGCCTACTGCCGCCGCTATTGCTTACGGTAT-GGACAAGGACAAGGAA--GGCGAAAAGA 1067358 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | || | || |||||| ||||||||||||| ||| ||| | ||| | || || Sbjct 1067357 ACATCCTCGTTTTTGATCTTGGTGGAGGAACCTTCGATGTCTCTCTTCTTACCATCGATT 1067298 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 ||| || ||||| || || ||||| |||||||||||||| ||||| |||||| | | Sbjct 1067297 CTGGAGTCTTTGAGGTCGTCGCTACCAACGGTGATACTCATCTTGGAGGAGAAGATTTCG 1067238 Query 451602 AT 451603 || Sbjct 1067237 AT 1067236 >seq1064 Length=16229 Score = 107 bits (118), Expect = 8e-18 Identities = 135/181 (75%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTT--ACTTCTTCATATGTTAAA-GTGA 152969 ||||||| | || |||| ||||||||| ||||| || || |||||||||||| ||| Sbjct 13758 TACATCTGGCTCTAAAATGCTCATATCT--TTCTTGAACATCGTCATATGTTAAATTTGA 13701 Query 152970 TTGGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAAT 153029 || ||||||||| |||| || | | | | || | |||||||| |||| |||||| Sbjct 13700 TT-TTTTTTGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAAC 13642 Query 153030 TATCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttttttAAAT 153089 ||| | || |||| ||||| | | ||| |||||| ||| ||||||||||||||| | Sbjct 13641 TATATCTGTTTTTTAAATCTTTATTTTTTAATGGTAATTTTTTTAAATTTTTTTTTAATT 13582 Query 153090 T 153090 | Sbjct 13581 T 13581 >seq1077 Length=15834 Score = 104 bits (114), Expect = 9e-17 Identities = 134/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATT 152971 ||||||| | || |||| ||||||||| | | || || |||||||||||| ||||| Sbjct 6620 TACATCTGGCTCTAAAATGCTCATATCTTTCACGAACATCGTCATATGTTAAATTTGATT 6561 Query 152972 GGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTA 153031 ||| ||||| |||| || | | | | || | |||||||| |||| |||||| || Sbjct 6560 -TTTTATGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAACTA 6502 Query 153032 TCAC-GATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttttttAAATT 153090 | | |||| |||| ||||| | | ||| |||||| ||| |||||||||||||||||| Sbjct 6501 TATCTGATT-TTTAAATCTTTATTTTTTAATGGTAATTTTTTTAAATTTTTTTTTAAATT 6443 Score = 91.5 bits (100), Expect = 6e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATT 152971 ||||||| | || |||| ||||||||| | | || || |||||||||||| ||||| Sbjct 7413 TACATCTGGCTCTAAAATGCTCATATCTTTCACGAACATCGTCATATGTTAAATTTGATT 7354 Query 152972 GGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTA 153031 ||| ||||| |||| || | | | | | | |||||||| |||| |||||| || Sbjct 7353 -TTTTATGTAACATTTTATTAATTTATTCGTTTAAATTATATACCCATAAAGAAAAACTA 7295 Query 153032 TCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttttttAAATT 153090 | | || |||| ||||| | | ||| |||||| ||| ||||| ||||||||||| Sbjct 7294 TATCTGTTTTTTAAATCTTTATTTTTTAATGGTAATTTTTTAAAATTATTTTTTAAATT 7236 Score = 89.7 bits (98), Expect = 2e-12 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 152914 ACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATTG 152972 |||||| | || |||| ||||||||| | | || || |||||||||||| ||||| Sbjct 9412 ACATCTGGCTCTAAAATGCTCATATCTTTCACGAACATCGTCATATGTTAAATTTGATT- 9354 Query 152973 GTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTAT 153032 ||| ||||| |||| || | | | | || | |||||||| |||| |||||| ||| Sbjct 9353 TTTTATGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAACTAT 9294 Query 153033 CACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttttttAAATT 153090 | || |||| ||||| | | ||| |||||| ||| || ||||||||| |||| Sbjct 9293 ATCTGTTTTTTAAATCTTTATTTTTTAATGGTAATTTTTTTATTTTTTTTTTTTAATT 9236 Score = 84.2 bits (92), Expect = 9e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATT 152971 ||||||| | || |||| ||||||||| | | || || |||||||||||| ||||| Sbjct 5569 TACATCTGGCTCTAAAATGCTCATATCTTTCACGAACATCGTCATATGTTAAATTTGATT 5628 Query 152972 GGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTA 153031 ||| ||||| |||| || | | | | || | |||||||| |||| |||||| || Sbjct 5629 -TTTTATGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAACTA 5687 Query 153032 TCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAttttt 153081 | | || |||| ||||| | | ||| |||||| ||| ||| ||||| Sbjct 5688 TATCTGTTTTTTAAATCTTTATTTTTTAATGGTAATTTTTTTAATTTTTT 5737 >seq1162 Length=12090 Score = 96.9 bits (106), Expect = 1e-14 Identities = 130/180 (72%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAAGTGATTG 152972 ||||||| | || |||| ||||||||| | | || || |||||||||||| ||| Sbjct 11961 TACATCTGGCTCTAAAATGCTCATATCTTTCACAAACATCGTCATATGTTAAA---TTTG 11905 Query 152973 GTTTT---TGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAAT 153029 |||| ||||| |||| || | | | | || | |||||||| |||| |||||| Sbjct 11904 ATTTTGAATGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAAC 11845 Query 153030 TATCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttttttAAAT 153089 ||| | || |||| ||||| | | ||| |||||| ||| ||||||||||||||||| Sbjct 11844 TATATCTGTTTTTTAAATCTTTATTTTTTAACGGTAATTTTTTTAAATTTTTTTTTAAAT 11785 >seq1020 Length=18108 Score = 95.1 bits (104), Expect = 5e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATT 152971 ||||||| | | |||| ||||||||| | | || || |||||||||||| ||||| Sbjct 696 TACATCTGGCTCAAAAATGCTCATATCTTTCACAAACATCGTCATATGTTAAATTTGATT 637 Query 152972 GGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTA 153031 ||| |||||| |||| || | | | | || | |||||||| |||| |||||| || Sbjct 636 -TTTTATGTAAGATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAACTA 578 Query 153032 TCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAttttttttt 153085 | | || |||| ||||| | | ||| |||||| ||| ||||||||||||| Sbjct 577 TATCTGTTTTTTAAATCTTTATTTTTTAATGGTAATTTTTTTAAATTTTTTTTT 524 >seq654 Length=87504 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || |||||||| || || || || ||||| | || Sbjct 81775 ATGCAGATCTTCGTCAAAACCCTTACCGGTAAAACAATCACCCTCGAGGTTGAGGCTTCC 81716 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||||| | || ||||| ||||| || ||||| ||||| || || || Sbjct 81715 GACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAG 81656 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || || ||||||||||| | ||| | |||| || || Sbjct 81655 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGGCGCACTCTTTCGGACTACAAC 81596 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | || |||||||| || Sbjct 81595 ATCCAGAAAGAGTCCACCCTTCACTTGGT 81567 >seq1228 Length=9297 Score = 89.7 bits (98), Expect = 2e-12 Identities = 186/277 (67%), Gaps = 15/277 (5%) Strand=Plus/Plus Query 152815 TTGTGGTACTATATTTAAGACACAATGAGCTTTTTTACCATATAAGGGTTTTGTACATCC 152874 ||| || || || ||||| | || | || || ||||||| | |||| | ||| || Sbjct 8293 TTGAGGAACAATGTTTAATATGCACTTAGATTAAATACCATAATAAGGTTCTACACAACC 8352 Query 152875 tttttcttttttAATAATATTTACTGGACTGTCATCTATACATCTAGACCTGAAATTCTC 152934 |||||||||||| | | ||| | ||||||| | || |||| ||| Sbjct 8353 TTTTTCTTTTTTGTTTTTTTTTTCG-------------TACATCTGGCTCTAAAATGCTC 8399 Query 152935 ATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATTGGTTTTTGTAAGTTTTTGTTTA 152993 |||||| | | || || |||||||||||| ||||| ||| ||||| |||| || | Sbjct 8400 ATATCTTTCACAAACATCGTCATATGTTAAATTTGATT-TTTTATGTAACATTTTATTAA 8458 Query 152994 CTAAATTATGCATATTATATAACCATCTTGAAAAATTATCACGATTGGCTAAAGCTTTAC 153053 | | | | | |||||||| ||| |||||| ||| | || |||| ||||| Sbjct 8459 TTTATTCGGGTAAATTATATACTCATAAAGAAAAACTATATCTGTTTTTTAAATCTTTAT 8518 Query 153054 TATCTAAAGGTAATATTTCTAAAtttttttttAAATT 153090 | | ||| ||||| ||| ||||||||||||| |||| Sbjct 8519 TTTTTAATAGTAATTTTTTTAAATTTTTTTTTTAATT 8555 >seq1041 Length=16984 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 152913 TACATCTAGACCTGAAATTCTCATATCTATTTCTTACTTCTTCATATGTTAAA-GTGATT 152971 ||||||| | || |||| ||||||| | | | || || |||||||||||| ||||| Sbjct 3426 TACATCTGGCTCTAAAATGCTCATATTTTTCACGAACATCGTCATATGTTAAATTTGATT 3485 Query 152972 GGTTTTTGTAAGTTTTTGTTTACTAAATTATGCATATTATATAACCATCTTGAAAAATTA 153031 ||| ||||| |||| || | | | | || | |||||||| |||| |||||| || Sbjct 3486 -TTTTATGTAACATTTTATTAATTTATTCGTGTAAATTATATACCCATAAAGAAAAACTA 3544 Query 153032 TCACGATTGGCTAAAGCTTTACTATCTAAAGGTAATATTTCTAAAtttttt 153082 | | || |||| ||||| | | ||| |||||| ||| |||||||||| Sbjct 3545 TATCTGTTTATTAAATCTTTATTTTTTAATGGTAATTTTTTTAAATTTTTT 3595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975686504496080