Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq539 120 2e-21 seq693 109 4e-18 seq530 91.5 1e-12 >seq539 Length=1154401 Score = 120 bits (132), Expect = 2e-21 Identities = 246/359 (69%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||||||||| || || | | ||||| || ||||| |||| |||| || Sbjct 1069731 TCAAAATCTTCCCCGCCAAGATGAGTATCACCATTTGTAGCGAGCACTTCAAAAACACCT 1069672 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | || | || || |||| ||| || |||||||| || | ||| || | ||| ||| Sbjct 1069671 TGGTCGATAGTCAGTAGAGATACGTCGAAAGTTCCACCGCCAAGATCGAAGACAAGGACA 1069612 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || ||||| | | ||| || || |||||||||| ||||| |||||||| || Sbjct 1069611 TT--TTTCTC-GACGCCAGATTTGTCGAGTCCATACGCAAGTGCAGCTGCAGTTGGCTCG 1069555 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 || ||||| | | || | || ||||||||| | |||||||||||||| ||||| | Sbjct 1069554 TTGATAATCCGAATCACTTCAATACCAGCAATCGTGCCTGCATCTTTAGTAGCTTGGCGC 1069495 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || |||||| ||||| || || ||||||| || || | || || ||||| | Sbjct 1069494 TGCTCATCGTTGAAATACGCCGGTACAGTAACGACTGCCCTTTTGACCGTTTGACCAAGA 1069435 Query 518327 TAAGCGCTTGCCG-TTTGTTTCATTTTACTTAAA--ATCATTGATGAAATTTGTTCTGG 518382 || | || | || |||| ||||| || || || | ||||| |||||||||||||| Sbjct 1069434 TACTC-CTCGGCGATTTGCTTCATCTT--TTGAAGGACCATTGCAGAAATTTGTTCTGG 1069379 >seq693 Length=61257 Score = 109 bits (120), Expect = 4e-18 Identities = 176/250 (70%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 1019637 GATCAGTGAAACCTTTTACTACGGAATAACTTGAACCAAAGAAATTGGGTTTGTCATTTT 1019696 |||| || || ||||||||| ||||||| |||||||| |||| ||||| || || Sbjct 44146 GATCTGTAAATCCTTTTACTGTTGAATAACCAGAACCAAAAAAATAAGGTTTTGAATCTT 44205 Query 1019697 CCGTAAAACCCTTT---TCGTCAGCCGA--GAAATT-ATTTTGTCCTTCAAAAATACAGC 1019750 | |||| || ||| || | | | | || || ||| | || ||||||||| | Sbjct 44206 CATTAAACCCATTTATTTCTTTACCAAAAGGATGTTCATTATTATATTTAAAAATACAAC 44265 Query 1019751 CAGTACCTAAATAAGTTAAATGAATATTATATTTTTGACAAATAAATGCCAAACACAATG 1019810 | || || ||||| |||||||||||||||| |||| ||| || || | | || Sbjct 44266 CTGTTCCCAAATATGTTAAATGAATATTATTATTTTCACATATTTTTGGAAGGGTAATTG 44325 Query 1019811 GGCCATACAAATTGTCTTTGACATTTTCGACTAATTTACCAGATTGTTCTAAATAATCGA 1019870 | | | ||||| ||| | | ||| || |||||||| || | ||||||||||||||| | Sbjct 44326 GAGAAAATAAATTATCTCTAATATTATCAACTAATTTTCCTGGTTGTTCTAAATAATCAA 44385 Query 1019871 TTGTTGAATA 1019880 |||||| ||| Sbjct 44386 TTGTTGTATA 44395 Score = 105 bits (116), Expect = 5e-17 Identities = 245/366 (67%), Gaps = 9/366 (2%) Strand=Plus/Minus Query 175622 ATTGTGCATTTTGCTGCTCATTCTCATGTCGATAATTCCTTTAAAAATTCTCTTGCTTTT 175681 ||| | |||||||| || || || || | | ||||| |||| || |||| | | Sbjct 40452 ATTATACATTTTGCAGCGCAATCACACGAACAAAATTCATTTACTGATGCTCTCCGGTAT 40393 Query 175682 ACTGAAACAAATGTTTTTGGAACCCATGTTTTACTAGAATGTTCTCGAATGTATGGCAAA 175741 || | ||| || ||||||| ||| ||| ||||| | || | ||||| ||| Sbjct 40392 ACAAATGATAATATTGTTGGAACACATACATTATTAGAAGCAACAAGATTATATGGTAAA 40333 Query 175742 CTAAAACTATTTTTCCATATGAGTACTGATGAAGTTTATGGTGAA--ATCGATA-CT--- 175795 | | ||| | ||| | |||||||||||||||||| ||| | |||| || Sbjct 40332 ATTGAGAAGTTTATTCATGTTTTTACTGATGAAGTTTATGGAGAATCAATGATATCTGTT 40273 Query 175796 -ACGGATAC--TAGTCGTGAAGTTTCTTTATTGTGTCCTACAAATCCTTATGCTGCAACA 175852 ||| | | || ||| |||| | || || ||||| ||| |||| || || ||| Sbjct 40272 AACGAAAATCATAAAACAGAACATTCTATTTTATGCCCTACTAATTCTTACGCAGCTACA 40213 Query 175853 AAAGCTGGTGCAGAACACATCGTGAAATCATATTTTTTATCATATAAATTACCTATTATT 175912 ||||| || |||||| || | |||||||| | || | |||| | || ||| || Sbjct 40212 AAAGCAGGCGCAGAATTAATAGCTCAATCATATAATCATTCTTTTAAAATGCCCATTGTT 40153 Query 175913 ATTGCTCGATGTAATAATGTCTATGGTCGTAATCAATATCCTGAAAAACTTATTCCTAAA 175972 ||| || | ||||| || ||||| | ||||||||||| |||||| ||||||| ||| Sbjct 40152 ATTAAAAGAGGAAATAACGTTTATGGACCAAATCAATATCCAGAAAAAGTTATTCCAAAA 40093 Query 175973 TTTATT 175978 |||||| Sbjct 40092 TTTATT 40087 >seq530 Length=3167015 Score = 91.5 bits (100), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 870817 TCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATC 870876 ||||||||||||||||||||||||| |||| || || ||||||| ||||||||||| || Sbjct 2359156 TCCAAATATTGCTAAAGAAATGCATGTTGGCCACTTGCGATCAACAATTATTGGTGATTC 2359215 Query 870877 TATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTGA 870936 ||| | | || ||| | ||| |||| ||| | || || || || || || Sbjct 2359216 TATCGCAAATCTCTTCGAAGCTTATGGCTACGAAGTTCTCAGAATAAACCACGTCGGCGA 2359275 Query 870937 TTGGGGAACTCAATTCGGTATGTTAATTGCTTATATTA 870974 |||||| || || ||||| ||| | || || || ||| Sbjct 2359276 TTGGGGCACACAGTTCGGCATGCTCATCGCACATCTTA 2359313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780759874649560