Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq538 253 3e-62 seq539 111 2e-19 >seq538 Length=1333408 Score = 253 bits (280), Expect = 3e-62 Identities = 424/609 (70%), Gaps = 8/609 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||||||||| |||||||| || || || || || | |||||| || ||||| || Sbjct 63514 TCGAAATCTTCACCGCCCAAGTGAGTGTCACCAGCAGTGGATTTGACCTCGAAGATCCCA 63455 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||||| | | |||||||| || || ||||| || || || || ||||| ||| Sbjct 63454 TCTTCAATGGAGAGGACGGAAACATCGAAGGTTCCACCGCCAAGATCGAAGATGAGGACG 63395 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | | ||||| || |||||||| ||||| || || || || || || Sbjct 63394 TTTCGCTCAGCACCGACCTTCTTGTCAAGACCGTAGGCGATGGCGGCAGCGGTGGGCTCG 63335 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| | ||||| || || | || || || || || ||||| Sbjct 63334 TTGATGATACGGAGGACGTTGATACCAGCGATGGTACCGGCGTCCTTGGTAGCCTGTCGC 63275 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| ||||| || ||||| || | | ||| | ||| ||||| Sbjct 63274 TGCGAGTCGTTGAAGTAGGCTGGGACAGTGACGACAGCATTGGGGACGTCCTTTCCGAGG 63215 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | ||| ||| ||||| || ||||| ||||| |||||||| | | | Sbjct 63214 TAAGCCTCGGCGGTGTCTCGCATCTTGGTGAGGACCATGGATGAGATCTCTTC-GGGGAA 63156 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || || || || || || | || || | ||| | || || | || Sbjct 63155 GAAGGTCTTGGTCTCGCCCTTGTACTCGACCTGGATCTTTGGCTT---GGTGTTGTCGTC 63099 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || || | | | ||||| | ||||| ||| ||||| | ||| |||||||||| Sbjct 63098 GACGACGTCAAAGGACCAGTGCTTCATGTCGGACTGGACAACTGAGTCGGAAAACTTTCG 63039 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || ||||| || | |||| |||||||||||| |||||||| Sbjct 63038 GCCAATCAATCGCTTGGCGTCAAAGACAGAGTTTGAGGGGTTCATGGCGACCTGGTTCTT 62979 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||| ||||| |||||||| || || || ||||||||||||||||| || Sbjct 62978 GGCGGCGTCACCGATGAGACGTTC---GGAGTCGGTGAAGGCGACGTACGATGGGGTAGT 62922 Query 8056 TCGATTCCC 8064 ||| || || Sbjct 62921 TCGGTTACC 62913 Score = 145 bits (160), Expect = 1e-29 Identities = 559/869 (64%), Gaps = 18/869 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || |||||| | || |||| || ||||| | ||||||||| || ||||| || || || Sbjct 64600 TCGTCTTCAGCCTTGAACTTCTCGGCATCGTTGACCATCTTCTCGATGTCCTCCTTGGAA 64541 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || ||||| || || || || || ||||| | ||| || | || ||| || Sbjct 64540 AGTCGGCCCTTGTCGTTGGTGATGGTGATCTTGTTCTCTTTGCCGGTGGACTTGTCGCAG 64481 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || || | ||||| || ||||| | ||||| | || | || || || | Sbjct 64480 GCAGAGACGTTGAGGATACCGTTGGCATCGATGTCGAAGGTGACCTCGATCTGGGGG--A 64423 Query 6749 CCCCTCGGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 | ||||| || |||||| || || | || || |||| || | | |||| ||| Sbjct 64422 CACCTCG-TGGGGCTGGGGGGATCTGGGTGAGGTCGAACTTACCGAGGACATTGTTGTCC 64364 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTT 6863 | | | | ||||||||||| |||| | || | ||||| || || || || Sbjct 64363 TTGGTCATAGCTCGTTCACCTTCGAAGACCTGGATGAGGACACCG--GGCTGGTTGTCGG 64306 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || | ||| | || || || || |||| | || | | Sbjct 64305 AGTAGGTGGTGAAGGTCTGCGACTGCTTGGTGGGGATGGTGGTGTTTCGCTTGATCAAGG 64246 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||| | ||||| || || | || || || || || | || || | || | Sbjct 64245 AGGTCATGACGCCACCAGCGGTCTCAATACCGAGGGAGAGTGGGGCAACATCGAGAAGGA 64186 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || || || ||| ||||| | ||||||||| ||||| | || | Sbjct 64185 GGAGATCCTGGACTTCCTCGGATTTGTCACCGCAAAGGATGGCGGCCTGGACGGCGGCAC 64126 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||||||||| || | || || ||||| || ||||| || || | Sbjct 64125 CGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGAGTTCCTTTCCGTTGAAGTAGT 64066 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || | | | || | || |||||||| || || |||||||| | ||||| || | Sbjct 64065 CCTGGAGGAGCTTCTGGACCTTGGGGATTCGAGTGGAGCCACCGACGAGGACGATATCGT 64006 Query 7164 TCACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TA 7219 | | || | || || || | |||||| || | ||| ||||| || || | | Sbjct 64005 GGA-TGCCGTTCTTGTCCATTCGGGCGTCTCGGAGAGATTTCTCGACGGGGTCGAGGGTG 63947 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | | ||||| | ||| || || || || || || || ||||| ||||| || ||| Sbjct 63946 CCT---CGGAAGAGGTCGGAGCAGAGCTCTTCGAATCGGGCTCGGGTGATGGAGGTGTAG 63890 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || ||||| || ||| | | ||||| ||||| |||| | || | | ||||| | Sbjct 63889 AAGTCAACACCCTCGAAGAGAGAATCGATTTCGATGGCGGCCTGGGTAGAGGAAGAGAGG 63830 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 |||||||| || ||||| || || ||||| | || |||| || ||| | ||||| Sbjct 63829 GTTCGCTTCGCTCGCTCGCAGGCGGTTCGGAGGCGTCGAACAGCGCGCTTGGATCCGGAG 63770 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTC 7428 || || ||||| || || || || ||||| Sbjct 63769 ATGTCCTTCTTGTGCTTTCGCTTGAACTC 63741 >seq539 Length=1154401 Score = 111 bits (122), Expect = 2e-19 Identities = 239/355 (67%), Gaps = 2/355 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || || | || ||||| || ||| || ||| ||||||| || Sbjct 1067236 ATCGAAATCTTCTCCTCCAAGATGAGTATCACCGTTGGTAGCGACGACCTCAAAGACTCC 1067295 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | | || ||||| || || || ||||| || ||||||| ||| | Sbjct 1067296 AGAATCGATGGTAAGAAGAGAGACATCGAAGGTTCCTCCACCAAGATCAAAAACGAGGAT 1067355 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | ||| | || |||| ||| || | |||||| || ||||| || || || || || Sbjct 1067356 GTTCTTTTCGCCTTCCTTGTCCTTGTCCATACCGTAAGCAATAGCGGCGGCAGTAGGCTC 1067415 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || || | ||| | ||| |||| || | || || || || || |||| Sbjct 1067416 GTTGATGATTCGCATGAC-GGTCATACCAGAGATGACACCGGCGTCCTTGGTGGCCTGTC 1067474 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || | ||| |||||||| ||||| || ||||| |||| ||||| | |||| Sbjct 1067475 GCTGGGCATCAGAGAAGTAGGCGGGGACAGTGACGACGGCGTGAGTGACGGGAGTTCCGA 1067534 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || ||| || || | ||||| || |||| ||| | || || ||||| Sbjct 1067535 GGTAGTCTTCGGCAATTTTCTTCATCTTTCCGAGAATCATAGCGGAGATTTCTTC 1067589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122796658400